hc_rect-GenomicHilbertCurve-method: Add rectangles on Hilbert curve

In jokergoo/HilbertCurve: Making 2D Hilbert Curve

Add rectangles on Hilbert curve

Description

Add rectangles on Hilbert curve

Usage

## S4 method for signature 'GenomicHilbertCurve'
hc_rect(object, gr, gp = gpar(fill = "red", col = "red"),
    mean_mode = c("w0", "absolute", "weighted", "max_freq"))

Arguments

object	a GenomicHilbertCurve-class object
gr	a GRanges object which contains the genomic regions to be mapped to the curve
gp	pass to hc_rect,HilbertCurve-method
mean_mode	pass to hc_rect,HilbertCurve-method

Details

It is basically a wrapper of hc_rect,HilbertCurve-method.

Value

Refer to hc_rect,HilbertCurve-method

Author(s)

Zuguang Gu <[e-mail]>

Examples

require(circlize)
require(GenomicRanges)
bed = generateRandomBed(nr = 100)
gr = GRanges(seqnames = bed[[1]], ranges = IRanges(bed[[2]], bed[[3]]))
hc = GenomicHilbertCurve()
hc_rect(hc, gr, gp = gpar(fill = rand_color(length(gr))))

jokergoo/HilbertCurve documentation built on Feb. 27, 2024, 6:44 p.m.