single_job: Submit a single job to the pipeline

In jokergoo/epik.cmd: Run epik analysis under command line

Description

Submit a single job to the pipeline

Usage

single_job(cmd, name, walltime = "1:00:00", mem = "1G", nodes = 1,
    email = NULL, dependency = NULL, enforce = FALSE, tmpdir = tempdir(), submit_by = "qsub",
    execute = TRUE)

Arguments

cmd	bash commands
name	name of the job
walltime	running time for the job
mem	memory for the job
nodes	nodes for the job
email	email the messages should be sent to
dependency	dependency of upstream jobs. The value is a vector of job IDs.
enforce	enforce to rerun the job
tmpdir	temp directory where the bash scripts are put
submit_by	which job system
execute	whether submit the job

Value

Job id

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
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jokergoo/epik.cmd documentation built on Sept. 28, 2019, 9:21 a.m.