API for jokergoo/simplifyEnrichment
Simplify Functional Enrichment Results

Global functions
.cluster_mat Source code
.onAttach Source code
GO_similarity Man page Source code
all_clustering_methods Man page Source code
anno_word_cloud Man page Source code
anno_word_cloud_from_GO Man page Source code
area_above_ecdf Man page Source code
assign_score2 Source code
binary_cut Man page Source code
block_mean Source code
check_pkg Source code
cluster_by_MCL Man page Source code
cluster_by_apcluster Man page Source code
cluster_by_dynamicTreeCut Man page Source code
cluster_by_fast_greedy Man page Source code
cluster_by_hdbscan Man page Source code
cluster_by_kmeans Man page Source code
cluster_by_leading_eigen Man page Source code
cluster_by_louvain Man page Source code
cluster_by_mclust Man page Source code
cluster_by_pam Man page Source code
cluster_by_walktrap Man page Source code
cluster_mat Source code
cluster_mat2 Source code
cluster_terms Man page Source code
cmp_calc_concordance Source code
cmp_calc_stats Source code
cmp_make_clusters Man page Source code
cmp_make_plot Man page Source code
compare_clustering_methods Man page Source code
count_words Man page Source code
cut_dend Source code
dend_max_depth Source code
dend_node_apply Man page Source code
difference_score Man page Source code
edit_node Man page Source code
elbow_finder Source code
export_to_shiny_app Man page Source code
generate_size_fun Source code
get_clustering_method Source code
guess_ont Man page Source code
heightDetails.word_cloud Man page Source code
help_msg Source code
ht_clusters Man page Source code
is_GO_id Source code
is_p_value Source code
keyword_enrichment Source code
keyword_enrichment_from_GO Man page Source code
knee_finder Source code
make_term_document_matrix Source code
other_mean Source code
partition_by_hclust Man page Source code
partition_by_kmeans Man page Source code
partition_by_kmeanspp Man page Source code
partition_by_pam Man page Source code
plot_binary_cut Man page Source code
prepare_keywords_tdm_for_GO Source code
random_GO Man page Source code
register_clustering_methods Man page Source code
remove_clustering_methods Man page Source code
render_dend Source code
reset_clustering_methods Man page Source code
scale_fontsize Man page Source code
se_opt Man page
select_cutoff Man page Source code
simplifyEnrichment Man page Source code
simplifyGO Man page Source code
simplifyGOFromMultipleLists Man page Source code
split_by_block Source code
summarizeGO Man page Source code
test_padj_column Source code
widthDetails.word_cloud Man page Source code
word_cloud_grob Man page Source code
jokergoo/simplifyEnrichment documentation built on Sept. 16, 2024, 8:39 a.m.