popphen_conditional_mutual_information()
Calculate genetic and population mutual
information given the allele frequecies and prior probability of an idividual
to belong to one population
1 2 | popphen_conditional_mutual_information(freq_list, pheno_data,
prior_key = "uniform")
|
freq_list |
list of data.table. Each element of the list is a data.table object with the allele frequency of the variants of one population. |
pheno_data |
data.table. Table with POP, mu, ssqr, NPHENO, columns where POP has the population names, mu has the phenotypes means, ssqr has the phenotypes standard deviations and NPHENO are the number of samples from where the phenotypes where measured |
prior_key |
string. Gives the which prior information should be used to calculate the mutual information (phenotipic, genetic or uniform). The uniform prior probaility for one population is equal to one divided by the number of The phenotipic/genetic prior probability is given by the number of phenotipic/genetic samples of that population divided by the total number of samples of all populations. Default (prior_key = 'uniform'). |
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