Files in jonathonthill/MMAPPR2
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
.BBSoptions
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/MMAPPR2.R
R/aicc_loess.R
R/all_classes.R
R/all_generics.R
R/candidates.R
R/distance.R
R/main.R
R/output.R
R/peaks.R
R/s4_methods.R
R/samtools_pileup.R
README.md
inst/CITATION
man/MMAPPR2.Rd
man/MmapprData-class.Rd
man/MmapprData-getters.Rd
man/MmapprParam-functions.Rd
man/MmapprParam.Rd
man/calculateDistance.Rd
man/generateCandidates.Rd
man/loessFit.Rd
man/mmappr.Rd
man/outputMmapprData.Rd
man/peakRefinement.Rd
man/prePeak.Rd
man/tempOutputFolder.Rd
tests/testthat.R
tests/testthat/helper-functions.R
tests/testthat/test_candidates.R
tests/testthat/test_data/bam_files/README
tests/testthat/test_data/bam_files/zy14_dummy.bam
tests/testthat/test_data/bam_files/zy14_dummy.bam.bai
tests/testthat/test_data/dummy.fasta
tests/testthat/test_data/objects/post_calcdist_dummy_md.RDS
tests/testthat/test_data/objects/post_loess_dummy_md.RDS
tests/testthat/test_data/objects/post_peakref_dummy_md.RDS
tests/testthat/test_data/objects/post_prepeak_dummy_md.RDS
tests/testthat/test_data/objects/vep_flags.RDS
tests/testthat/test_distance.R
tests/testthat/test_loess.R
tests/testthat/test_main.R
tests/testthat/test_output.R
tests/testthat/test_peaks.R
tests/testthat/test_samtools_pileup.R
vignettes/MMAPPR2.Rmd
