MmapprData-getters: MmapprData Getters
In jonathonthill/MMAPPR2: Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

Description Usage Arguments Value See Also Examples

Access slots of MmapprData object.

## S4 method for signature 'MmapprData'
param(obj)

## S4 method for signature 'MmapprData'
distance(obj)

## S4 method for signature 'MmapprData'
peaks(obj)

## S4 method for signature 'MmapprData'
candidates(obj)

obj

Desired MmapprData object.

Desired attribute.

MmapprData

if (requireNamespace('MMAPPR2data', quietly=TRUE)
        & all(Sys.which(c("samtools", "vep")) != "")) {
    mmappr_param <- MmapprParam(refFasta = MMAPPR2data::goldenFasta(),
                               wtFiles = MMAPPR2data::exampleWTbam(),
                               mutFiles = MMAPPR2data::exampleMutBam(),
                               species = "danio_rerio",
                               outputFolder = tempOutputFolder())

    md <- new('MmapprData', param = mmappr_param)

    param(md)
    distance(md)
    peaks(md)
    candidates(md)
}