MmapprData-getters: MmapprData Getters

Description Usage Arguments Value See Also Examples

Description

Access slots of MmapprData object.

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
## S4 method for signature 'MmapprData'
param(obj)

## S4 method for signature 'MmapprData'
distance(obj)

## S4 method for signature 'MmapprData'
peaks(obj)

## S4 method for signature 'MmapprData'
candidates(obj)

Arguments

obj

Desired MmapprData object.

Value

Desired attribute.

See Also

MmapprData

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
if (requireNamespace('MMAPPR2data', quietly=TRUE)
        & all(Sys.which(c("samtools", "vep")) != "")) {
    mmappr_param <- MmapprParam(refFasta = MMAPPR2data::goldenFasta(),
                               wtFiles = MMAPPR2data::exampleWTbam(),
                               mutFiles = MMAPPR2data::exampleMutBam(),
                               species = "danio_rerio",
                               outputFolder = tempOutputFolder())

    md <- new('MmapprData', param = mmappr_param)

    param(md)
    distance(md)
    peaks(md)
    candidates(md)
}

jonathonthill/MMAPPR2 documentation built on Oct. 2, 2019, 8:16 a.m.