abif-class: ABIF Class Objects

In jonathonthill/sangerseqR: Tools for Sanger Sequencing Data in R

ABIF Class Objects

Description

S4 object returned by read.abif containing all fields in the ABIF file format (see http://home.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf). Data fields vary by machine and basecaller versions. Must be converted to sangerseq to be used in other functions from this package.

Slots

header

Header information from the file.

directory

Directory information from file containing field names and information for reading binary data.

data

List object containing all data fields and values in file. Included fields vary by machine and basecaller versions.

See Also

read.abif, scf, sangerseq

Examples

hetab1 <- read.abif(system.file("extdata", 
                                "heterozygous.ab1", 
                                package = "sangerseqR")) 
str(hetab1)

jonathonthill/sangerseqR documentation built on July 1, 2023, 4:55 p.m.