get_fcs_resultsQC: Load your QC results or, if none, run QC on your data

In jonesnoaht/BTIPFlow: What the Package Does (This Package Assists with Flow Analysis)

Load your QC results or, if none, run QC on your data

Description

Load your QC results or, if none, run QC on your data

Usage

get_fcs_resultsQC(QC_folder = "./resultsQC/", raw_folder = "./rawData/")

Arguments

QC_folder	the path to the folder with the QCed data
raw_folder	the path to the folder with the raw files

Details

Only use this feature if you are in the parent folder of the files with which you are working. If the filepath is too long or perhapse has some odd characters, then you read.flowSet() may have some difficulties.

Value

a cytoset with QCed data

Examples

## Not run: 
get_fcs_resultsQC(QC_folder = "./RG Microbiome -APCs panel/resultsQC/",
                  raw_folder = "../20200810NJ-ACEFlow/good/") +
                  scale_x_continuous(breaks = seq(0, 10^6, 0.1*10^2),
                                     labels = label_scientific()) +
                  scale_y_continuous(breaks = seq(0, 10^6, 2*10^3),
                                     labels = label_scientific()) +
                  scale_x_flowjo_biexp()

## End(Not run)

jonesnoaht/BTIPFlow documentation built on Feb. 20, 2024, 8:45 a.m.