read.loci: Read in locus file
In josefin-werme/LAVA: Local Analysis of [co]Variant Association
View source: R/input_processing.R
read.loci R Documentation
Read in locus file
Description
This function reads in the locus file, defining the locus boundaries using either coordinates (headers: 'CHR', 'START', 'STOP') and/or ';' separated SNP lists (header: 'SNPS').
A locus ID column is also required (header: 'LOC').
If both coordinates and SNP list columns are provided, only the SNP lists will be used for subsetting the reference data (this can be convenient if the SNP coordinates are based on a different genome build version than the reference).
Usage
read.loci(loc.file)
Arguments
loc.file
Name of locus file
josefin-werme/LAVA documentation built on July 4, 2024, 8:11 p.m.
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View source: R/input_processing.R
| read.loci | R Documentation |
Read in locus file
Description
This function reads in the locus file, defining the locus boundaries using either coordinates (headers: 'CHR', 'START', 'STOP') and/or ';' separated SNP lists (header: 'SNPS').
A locus ID column is also required (header: 'LOC').
If both coordinates and SNP list columns are provided, only the SNP lists will be used for subsetting the reference data (this can be convenient if the SNP coordinates are based on a different genome build version than the reference).
Usage
read.loci(loc.file)
Arguments
loc.file |
Name of locus file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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