UPDATES.md
In josefin-werme/lava: Local Analysis of [co]Variant Association
Update history
v0.1.5
- added support for custom LAVA LD reference file format
- made UK Biobank based LD files available for analysis of European ancestry data
- added (partial) correction for low reference data sample sizes
- updated analysis of binary phenotypes
- changed univariate analysis model from logistic regression to linear probability
- changed computation of latent-scale local heritability estimates (using formulas from Lee et al. 2011)
- if population prevalence not provided, assumes no ascertainment and uses formula 17
- if population prevalence is provided, uses formula 23
- removed dependency on snpStats package
v0.1.3
- added support for eQTL analysis
josefin-werme/lava documentation built on July 17, 2025, 5:21 a.m.
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Update history
v0.1.5
- added support for custom LAVA LD reference file format
- made UK Biobank based LD files available for analysis of European ancestry data
- added (partial) correction for low reference data sample sizes
- updated analysis of binary phenotypes
- changed univariate analysis model from logistic regression to linear probability
- changed computation of latent-scale local heritability estimates (using formulas from Lee et al. 2011)
- if population prevalence not provided, assumes no ascertainment and uses formula 17
- if population prevalence is provided, uses formula 23
- removed dependency on snpStats package
v0.1.3
- added support for eQTL analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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