Man pages for joshualiuxu/qcmi
Quantify Community-level Microbial Interactions
| assigned_process | Identifying ecological associations as environmental... |
| cal_alphacon | Calculating the contributions of putative biotic associations... |
| cal_betacon | Calculating the contributions of putative biotic associations... |
| cal_network | Construct ecological networks using sequencing-based... |
| filter_ps | Filter OTU table by occurrence and abundance |
| hello | Hello, World! |
| idirect | Disentangling direct from indirect relationships in... |
| neg.mean | Create function that averages only negative values in a... |
| nnsd | Accessory function for Random Matrix Theory |
| pos.mean | Create function that averages only positive values in a... |
| qcmi | Quantify the strength of putative biotic associations at the... |
| rmt | Random Matrix Theory to filter correlation coefficient |
| test_link_dl | Classifying ecological associations into the process of... |
| test_link_env | Classifying ecological associations into the process of... |
| trans_ps | Convert the data to phyloseq format, including OTU table and... |
| zero | Find the number of zeroes in a vector |
