cal_network: Construct ecological networks using sequencing-based...
In joshualiuxu/qcmi: Quantify Community-level Microbial Interactions
cal_network R Documentation
Construct ecological networks using sequencing-based community data
Description
Construct ecological networks using sequencing-based community data
Usage
cal_network(
ps = filteredps,
N = 0,
r.threshold = 0.6,
p.threshold = 0.05,
lambda.min.ratio = 0.01,
nlambda = 20,
ncores = 1,
method = c("spearman", "pearson", "spieceasi")
)
Arguments
ps
N
r.threshold
p.threshold
lambda.min.ratio
nlambda
ncores
method
Author(s)
Contact: Xu Liu xliu@issas.ac.cn
joshualiuxu/qcmi documentation built on March 12, 2023, 4:26 p.m.
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| cal_network | R Documentation |
Construct ecological networks using sequencing-based community data
Description
Construct ecological networks using sequencing-based community data
Usage
cal_network(
ps = filteredps,
N = 0,
r.threshold = 0.6,
p.threshold = 0.05,
lambda.min.ratio = 0.01,
nlambda = 20,
ncores = 1,
method = c("spearman", "pearson", "spieceasi")
)
Arguments
ps |
|
N |
|
r.threshold |
|
p.threshold |
|
lambda.min.ratio |
|
nlambda |
|
ncores |
|
method |
Author(s)
Contact: Xu Liu xliu@issas.ac.cn
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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