.DS_Store
.Rbuildignore
.Rhistory
.Rproj.user/E89D3D53/cpp-compilation-config
.Rproj.user/E89D3D53/cpp-definition-cache
.Rproj.user/E89D3D53/pcs/debug-breakpoints.pper
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.Rproj.user/E89D3D53/persistent-state
.Rproj.user/E89D3D53/rmd-outputs
.Rproj.user/E89D3D53/saved_source_markers
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.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/annotation_functions.R
R/block_functions.R
R/data_validation_functions.R
R/gene_map_functions.R
R/input_functions.R
R/optimise_block_size_functions.R
R/pvalue_functions.R
R/simulate_data_scripts.R
R/tidy_functions.R
README.md
Read-and-delete-me
data-raw/.DS_Store
data-raw/DATASET.R
data-raw/bg_windows.txt
data-raw/define_candidate_sets.R
data-raw/hg19_nonredundant_noORS.gene.ens.txt
data-raw/hgnc.biomart.ens.chr.s.e.initially.missing.txt
data-raw/hgnc.biomart.ens.chr.s.e.txt
data-raw/hgnc.biomart.txt
data-raw/hgnc.ens.intitally.missingtxt
data-raw/hgnc.ens.txt
data-raw/kegg.R
data-raw/mart_export.txt
data-raw/ncd.R
data-raw/test_windows.txt
data/central_background.rda
data/central_candidates.rda
data/eastern_background.rda
data/eastern_candidates.rda
data/genes.rda
data/genes.windows.rds
data/genes_2kb.rda
data/internal_background_5kb.rda
data/internal_background_focal.rda
data/internal_candidates_0.05.rda
data/internal_candidates_0.1.rda
data/internal_candidates_0.5.rda
data/internal_candidates_5kb.rda
data/internal_candidates_focal.rda
data/kegg_long.rda
data/test.genes.rds
data/windows.rds
how_to_use_cpp_stringvec.R
man/multiPermr-package.Rd
man/rcpp_hello_world.Rd
multiPermr.Rproj
original_rscrlpt.R
package_config.R
package_workflow.R
profiling.R
scratch.setup.Rmd
src/RcppExports.cpp
src/RcppExports.o
src/multiPermr.so
src/p_value_functionscpp.cpp
src/p_value_functionscpp.o
src/string_vector_intersect.cpp
src/string_vector_intersect.o