plot_points: plot_points

In josschavezf/erba: erba: Expression Regulators from Bacteria and Archaea

Description

plot total regulators versus ORFs per genome

Usage

plot_points(
  data,
  type = "general",
  x,
  y,
  filename = "figure.tiff",
  title = "",
  xlab = "",
  ylab = "",
  ymax = 200,
  model.degree = 1
)

Arguments

data	A data.frame object
type	either "general" or "groups" for plotting per phylogenetic group
x	variable name
y	variable name
filename	file name with .tiff extension
title	plot title
xlab	x-axis title
ylab	y-axis title
ymax	A number setting the ylab superior limit.
model.degree	Degrees for the polynomial regression model. By default model.degree = 1.

Examples

plot_points(data = data_kos_sigma, type = "general", filename = "example_general.tiff", title = "Sigma factors", ylab = "Sigma factors per genome", ymax = 120)
plot_points(data = data_kos_sigma, type = "groups", filename = "example_groups.tiff", title = "Sigma factors", ylab = "Sigma factors per genome", ymax = 120 )

josschavezf/erba documentation built on May 2, 2021, 7:33 a.m.