API for jotsetung/SeqUtils
Utility functions for high throughput sequencing
| Global functions | |
|---|---|
| .doSampleBam | Source code |
| doReduce | Source code |
| overview | Man page |
| overview,ANY | Man page |
| overview,QA | Man page |
| plot | Man page |
| plot,ANY | Man page |
| plot,QANucleotideByCycle-method | Man page |
| plot,QANucleotideUse-method | Man page |
| plot,QAQualityByCycle-method | Man page |
| plot,QAQualityUse-method | Man page |
| plot,QAReadQuality-method | Man page |
| plot,QASequenceUse-method | Man page |
| plotDensity | Man page |
| plotDensity,QAQualityUse-method | Man page |
| plotNucleotideCountByCycle | Source code |
| plotNucleotideUse | Source code |
| plotQualByCycle | Source code |
| plotQualityUse | Source code |
| plotQualityUseDensity | Source code |
| plotSequenceUse | Source code |
| reduce | Man page |
| reduce,RangedSummarizedExperiment-method | Man page |
| reduce,SummarizedExperiment0-method | Man page |
| sampleBam | Man page |
| sampleBam,BamFile-method | Man page |
| sampleBam,character-method | Man page |
| summarizeAlignment | Man page Source code |
| table | Man page |
| table,ANY | Man page |
| table,QAAdapterContamination-method | Man page |
| table,QAFrequentSequence-method | Man page |
| table,QANucleotideUse-method | Man page |
| tableAdapterContamination | Source code |
| tableFrequentSequence | Source code |
