API for jotsetung/SeqUtils
Utility functions for high throughput sequencing

Global functions
doReduce Source code
doSampleBam Source code
overview Man page
overview,ANY Man page
overview,QA Man page
plot Man page
plot,ANY Man page
plot,QANucleotideByCycle-method Man page
plot,QANucleotideUse-method Man page
plot,QAQualityByCycle-method Man page
plot,QAQualityUse-method Man page
plot,QAReadQuality-method Man page
plot,QASequenceUse-method Man page
plotDensity Man page
plotDensity,QAQualityUse-method Man page
plotNucleotideCountByCycle Source code
plotNucleotideUse Source code
plotQualByCycle Source code
plotQualityUse Source code
plotQualityUseDensity Source code
plotSequenceUse Source code
reduce Man page
reduce,RangedSummarizedExperiment-method Man page
reduce,SummarizedExperiment0-method Man page
sampleBam Man page
sampleBam,BamFile-method Man page
sampleBam,character-method Man page
summarizeAlignment Man page Source code
table Man page
table,ANY Man page
table,QAAdapterContamination-method Man page
table,QAFrequentSequence-method Man page
table,QANucleotideUse-method Man page
tableAdapterContamination Source code
tableFrequentSequence Source code
jotsetung/SeqUtils documentation built on May 18, 2017, 7:21 a.m.