jotsetung/ensembldb-old
Utilities to create and use an Ensembl based annotation database

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148
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14
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5
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jotsetung/ensembldb-old: Utilities to create and use an Ensembl based annotation database
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API

API for jotsetung/ensembldb-old
Utilities to create and use an Ensembl based annotation database

Global functions
BasicFilter-class Man page
EnsDb Man page
EnsDb-class Man page
EntrezidFilter Man page
EntrezidFilter-class Man page
ExonidFilter Man page
ExonidFilter-class Man page
GenebiotypeFilter Man page
GenebiotypeFilter-class Man page
GeneidFilter Man page
GeneidFilter-class Man page
GenenameFilter Man page
GenenameFilter-class Man page
SeqendFilter Man page
SeqendFilter-class Man page
SeqnameFilter Man page
SeqnameFilter-class Man page
SeqstartFilter Man page
SeqstartFilter-class Man page
SeqstrandFilter Man page
SeqstrandFilter-class Man page
TxbiotypeFilter Man page
TxbiotypeFilter-class Man page
TxidFilter Man page
TxidFilter-class Man page
buildQuery Man page
buildQuery,EnsDb-method Man page
column Man page
column,EntrezidFilter,EnsDb,character-method Man page
column,EntrezidFilter,EnsDb,missing-method Man page
column,EntrezidFilter,missing,missing-method Man page
column,ExonidFilter,EnsDb,character-method Man page
column,ExonidFilter,EnsDb,missing-method Man page
column,ExonidFilter,missing,missing-method Man page
column,GenebiotypeFilter,EnsDb,character-method Man page
column,GenebiotypeFilter,EnsDb,missing-method Man page
column,GenebiotypeFilter,missing,missing-method Man page
column,GeneidFilter,EnsDb,character-method Man page
column,GeneidFilter,EnsDb,missing-method Man page
column,GeneidFilter,missing,missing-method Man page
column,GenenameFilter,EnsDb,character-method Man page
column,GenenameFilter,EnsDb,missing-method Man page
column,GenenameFilter,missing,missing-method Man page
column,SeqendFilter,EnsDb,character-method Man page
column,SeqendFilter,EnsDb,missing-method Man page
column,SeqendFilter,missing,missing-method Man page
column,SeqnameFilter,EnsDb,character-method Man page
column,SeqnameFilter,EnsDb,missing-method Man page
column,SeqnameFilter,missing,missing-method Man page
column,SeqstartFilter,EnsDb,character-method Man page
column,SeqstartFilter,EnsDb,missing-method Man page
column,SeqstartFilter,missing,missing-method Man page
column,SeqstrandFilter,EnsDb,character-method Man page
column,SeqstrandFilter,EnsDb,missing-method Man page
column,SeqstrandFilter,missing,missing-method Man page
column,TxbiotypeFilter,EnsDb,character-method Man page
column,TxbiotypeFilter,EnsDb,missing-method Man page
column,TxbiotypeFilter,missing,missing-method Man page
column,TxidFilter,EnsDb,character-method Man page
column,TxidFilter,EnsDb,missing-method Man page
column,TxidFilter,missing,missing-method Man page
condition Man page
condition,BasicFilter-method Man page
dbconn Man page
dbconn,EnsDb-method Man page
disjointExons,EnsDb-method Man page
ensDbFromGRanges Man page
ensDbFromGtf Man page
ensemblVersion Man page
ensemblVersion,EnsDb-method Man page
exons Man page
exons,EnsDb-method Man page
exonsBy Man page
exonsBy,EnsDb-method Man page
fetchTablesFromEnsembl Man page
genes Man page
genes,EnsDb-method Man page
getGenomeFaFile Man page
getGenomeFaFile,EnsDb-method Man page
lengthOf Man page
lengthOf,EnsDb-method Man page
lengthOf,GRangesList-method Man page
listColumns Man page
listColumns,EnsDb-method Man page
listGenebiotypes Man page
listGenebiotypes,EnsDb-method Man page
listTables Man page
listTables,EnsDb-method Man page
listTxbiotypes Man page
listTxbiotypes,EnsDb-method Man page
makeEnsemblSQLiteFromTables Man page
makeEnsembldbPackage Man page
metadata Man page
metadata,EnsDb-method Man page
organism Man page
organism,EnsDb-method Man page
print,BasicFilter-method Man page
seqinfo Man page
seqinfo,EnsDb-method Man page
show Man page
show,BasicFilter-method Man page
show,EnsDb-method Man page
toSAF Man page
toSAF,GRangesList-method Man page
transcripts Man page
transcripts,EnsDb-method Man page
transcriptsBy Man page
transcriptsBy,EnsDb-method Man page
where Man page
where,BasicFilter,EnsDb,character-method Man page
where,BasicFilter,EnsDb,missing-method Man page
where,BasicFilter,missing,missing-method Man page
where,EntrezidFilter,EnsDb,character-method Man page
where,EntrezidFilter,EnsDb,missing-method Man page
where,EntrezidFilter,missing,missing-method Man page
where,ExonidFilter,EnsDb,character-method Man page
where,ExonidFilter,EnsDb,missing-method Man page
where,ExonidFilter,missing,missing-method Man page
where,GenebiotypeFilter,EnsDb,character-method Man page
where,GenebiotypeFilter,EnsDb,missing-method Man page
where,GenebiotypeFilter,missing,missing-method Man page
where,GeneidFilter,EnsDb,character-method Man page
where,GeneidFilter,EnsDb,missing-method Man page
where,GeneidFilter,missing,missing-method Man page
where,GenenameFilter,EnsDb,character-method Man page
where,GenenameFilter,EnsDb,missing-method Man page
where,GenenameFilter,missing,missing-method Man page
where,SeqendFilter,EnsDb,character-method Man page
where,SeqendFilter,EnsDb,missing-method Man page
where,SeqendFilter,missing,missing-method Man page
where,SeqnameFilter,EnsDb,character-method Man page
where,SeqnameFilter,EnsDb,missing-method Man page
where,SeqnameFilter,missing,missing-method Man page
where,SeqstartFilter,EnsDb,character-method Man page
where,SeqstartFilter,EnsDb,missing-method Man page
where,SeqstartFilter,missing,missing-method Man page
where,SeqstrandFilter,EnsDb,character-method Man page
where,SeqstrandFilter,EnsDb,missing-method Man page
where,SeqstrandFilter,missing,missing-method Man page
where,TxbiotypeFilter,EnsDb,character-method Man page
where,TxbiotypeFilter,EnsDb,missing-method Man page
where,TxbiotypeFilter,missing,missing-method Man page
where,TxidFilter,EnsDb,character-method Man page
where,TxidFilter,EnsDb,missing-method Man page
where,TxidFilter,missing,missing-method Man page
where,list,EnsDb,character-method Man page
where,list,EnsDb,missing-method Man page
where,list,missing,missing-method Man page
jotsetung/ensembldb-old documentation built on May 19, 2019, 9:41 p.m.

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