API for jotsetung/ensembldb-old
Utilities to create and use an Ensembl based annotation database

Global functions
BasicFilter-class Man page
EnsDb Man page Source code
EnsDb-class Man page
EntrezidFilter Man page Source code
EntrezidFilter-class Man page
ExonidFilter Man page Source code
ExonidFilter-class Man page
GenebiotypeFilter Man page Source code
GenebiotypeFilter-class Man page
GeneidFilter Man page Source code
GeneidFilter-class Man page
GenenameFilter Man page Source code
GenenameFilter-class Man page
SeqendFilter Man page Source code
SeqendFilter-class Man page
SeqnameFilter Man page Source code
SeqnameFilter-class Man page
SeqstartFilter Man page Source code
SeqstartFilter-class Man page
SeqstrandFilter Man page Source code
SeqstrandFilter-class Man page
TxbiotypeFilter Man page Source code
TxbiotypeFilter-class Man page
TxidFilter Man page Source code
TxidFilter-class Man page
abbrevOrganismName Source code
addRequiredTables Source code
buildMetadata Source code
buildQuery Man page Source code
buildQuery,EnsDb-method Man page
buildQueryOld Source code
checkFilter Source code
checkValidEnsDb Source code
column Man page
column,EntrezidFilter,EnsDb,character-method Man page
column,EntrezidFilter,EnsDb,missing-method Man page
column,EntrezidFilter,missing,missing-method Man page
column,ExonidFilter,EnsDb,character-method Man page
column,ExonidFilter,EnsDb,missing-method Man page
column,ExonidFilter,missing,missing-method Man page
column,GenebiotypeFilter,EnsDb,character-method Man page
column,GenebiotypeFilter,EnsDb,missing-method Man page
column,GenebiotypeFilter,missing,missing-method Man page
column,GeneidFilter,EnsDb,character-method Man page
column,GeneidFilter,EnsDb,missing-method Man page
column,GeneidFilter,missing,missing-method Man page
column,GenenameFilter,EnsDb,character-method Man page
column,GenenameFilter,EnsDb,missing-method Man page
column,GenenameFilter,missing,missing-method Man page
column,SeqendFilter,EnsDb,character-method Man page
column,SeqendFilter,EnsDb,missing-method Man page
column,SeqendFilter,missing,missing-method Man page
column,SeqnameFilter,EnsDb,character-method Man page
column,SeqnameFilter,EnsDb,missing-method Man page
column,SeqnameFilter,missing,missing-method Man page
column,SeqstartFilter,EnsDb,character-method Man page
column,SeqstartFilter,EnsDb,missing-method Man page
column,SeqstartFilter,missing,missing-method Man page
column,SeqstrandFilter,EnsDb,character-method Man page
column,SeqstrandFilter,EnsDb,missing-method Man page
column,SeqstrandFilter,missing,missing-method Man page
column,TxbiotypeFilter,EnsDb,character-method Man page
column,TxbiotypeFilter,EnsDb,missing-method Man page
column,TxbiotypeFilter,missing,missing-method Man page
column,TxidFilter,EnsDb,character-method Man page
column,TxidFilter,EnsDb,missing-method Man page
column,TxidFilter,missing,missing-method Man page
compareChromosomes Source code
compareEnsDbs Source code
compareExons Source code
compareGenes Source code
compareTx Source code
condition Man page
condition,BasicFilter-method Man page
dbconn Man page
dbconn,EnsDb-method Man page
disjointExons,EnsDb-method Man page
ensDbFromGRanges Man page Source code
ensDbFromGtf Man page Source code
ensemblVersion Man page
ensemblVersion,EnsDb-method Man page
ensemblVersionFromGtfFileName Source code
exons Man page
exons,EnsDb-method Man page
exonsBy Man page
exonsBy,EnsDb-method Man page
fetchTablesFromEnsembl Man page Source code
genes Man page
genes,EnsDb-method Man page
genomeVersionFromGtfFileName Source code
getGenomeFaFile Man page
getGenomeFaFile,EnsDb-method Man page
getMetaDataValue Source code
getWhat Source code
joinQueryOnColumns Source code
joinQueryOnTables Source code
lengthOf Man page
lengthOf,EnsDb-method Man page
lengthOf,GRangesList-method Man page
listColumns Man page
listColumns,EnsDb-method Man page
listGenebiotypes Man page
listGenebiotypes,EnsDb-method Man page
listTables Man page
listTables,EnsDb-method Man page
listTxbiotypes Man page
listTxbiotypes,EnsDb-method Man page
loadEnsDb Source code
makeEnsemblSQLiteFromTables Man page Source code
makeEnsembldbPackage Man page Source code
makeObjectName Source code
makePackageName Source code
metadata Man page
metadata,EnsDb-method Man page
organism Man page
organism,EnsDb-method Man page
organismFromGtfFileName Source code
organismName Source code
prefixColumns Source code
print,BasicFilter-method Man page
removePrefix Source code
requireTable Source code
seqinfo Man page
seqinfo,EnsDb-method Man page
show Man page
show,BasicFilter-method Man page
show,EnsDb-method Man page
toSAF Man page
toSAF,GRangesList-method Man page
toSaf Source code
transcripts Man page
transcripts,EnsDb-method Man page
transcriptsBy Man page
transcriptsBy,EnsDb-method Man page
tryGetSeqinfoFromEnsembl Source code
validateConditionFilter Source code
validateEnsDb Source code
where Man page Source code
where,BasicFilter,EnsDb,character-method Man page
where,BasicFilter,EnsDb,missing-method Man page
where,BasicFilter,missing,missing-method Man page
where,EntrezidFilter,EnsDb,character-method Man page
where,EntrezidFilter,EnsDb,missing-method Man page
where,EntrezidFilter,missing,missing-method Man page
where,ExonidFilter,EnsDb,character-method Man page
where,ExonidFilter,EnsDb,missing-method Man page
where,ExonidFilter,missing,missing-method Man page
where,GenebiotypeFilter,EnsDb,character-method Man page
where,GenebiotypeFilter,EnsDb,missing-method Man page
where,GenebiotypeFilter,missing,missing-method Man page
where,GeneidFilter,EnsDb,character-method Man page
where,GeneidFilter,EnsDb,missing-method Man page
where,GeneidFilter,missing,missing-method Man page
where,GenenameFilter,EnsDb,character-method Man page
where,GenenameFilter,EnsDb,missing-method Man page
where,GenenameFilter,missing,missing-method Man page
where,SeqendFilter,EnsDb,character-method Man page
where,SeqendFilter,EnsDb,missing-method Man page
where,SeqendFilter,missing,missing-method Man page
where,SeqnameFilter,EnsDb,character-method Man page
where,SeqnameFilter,EnsDb,missing-method Man page
where,SeqnameFilter,missing,missing-method Man page
where,SeqstartFilter,EnsDb,character-method Man page
where,SeqstartFilter,EnsDb,missing-method Man page
where,SeqstartFilter,missing,missing-method Man page
where,SeqstrandFilter,EnsDb,character-method Man page
where,SeqstrandFilter,EnsDb,missing-method Man page
where,SeqstrandFilter,missing,missing-method Man page
where,TxbiotypeFilter,EnsDb,character-method Man page
where,TxbiotypeFilter,EnsDb,missing-method Man page
where,TxbiotypeFilter,missing,missing-method Man page
where,TxidFilter,EnsDb,character-method Man page
where,TxidFilter,EnsDb,missing-method Man page
where,TxidFilter,missing,missing-method Man page
where,list,EnsDb,character-method Man page
where,list,EnsDb,missing-method Man page
where,list,missing,missing-method Man page
jotsetung/ensembldb-old documentation built on May 18, 2017, 8:12 a.m.