Man pages for jotsetung/ensembldb
Utilities to create and use Ensembl-based annotation databases
| cdsToTranscript | Map positions within the CDS to coordinates relative to the... |
| convertFilter | Convert an AnnotationFilter to a SQL WHERE condition for... |
| Deprecated | Deprecated functionality |
| EnsDb | Connect to an EnsDb object |
| EnsDb-AnnotationDbi | Integration into the AnnotationDbi framework |
| EnsDb-class | Basic usage of an Ensembl based annotation database |
| EnsDb-exonsBy | Retrieve annotation data from an Ensembl based package |
| EnsDb-lengths | Calculating lengths of features |
| EnsDb-seqlevels | Support for other than Ensembl seqlevel style |
| EnsDb-sequences | Functionality related to DNA/RNA sequences |
| EnsDb-utils | Utility functions |
| Filter-classes | Filters supported by ensembldb |
| genomeToProtein | Map genomic coordinates to protein coordinates |
| genomeToTranscript | Map genomic coordinates to transcript coordinates |
| global-filters | Globally add filters to an EnsDb database |
| hasProteinData-EnsDb-method | Determine whether protein data is available in the database |
| listEnsDbs | List EnsDb databases in a MariaDB/MySQL server |
| makeEnsemblDbPackage | Generating a Ensembl annotation package from Ensembl |
| ProteinFunctionality | Protein related functionality |
| proteinToGenome | Map within-protein coordinates to genomic coordinates |
| proteinToTranscript | Map protein-relative coordinates to positions within the... |
| runEnsDbApp | Search annotations interactively |
| transcriptToCds | Map transcript-relative coordinates to positions within the... |
| transcriptToGenome | Map transcript-relative coordinates to genomic coordinates |
| transcriptToProtein | Map transcript-relative coordinates to amino acid residues of... |
| useMySQL-EnsDb-method | Use a MariaDB/MySQL backend |
