API for jotsetung/xcmsExtensions
Extensions to the xcms package

Global functions
$,MSslice-method	Man page
CompoundidFilter	Man page
CompoundidFilter-class	Man page
MSdata	Man page
MSdata-class	Man page
MSslice	Man page
MSslice-class	Man page
MSsliceList	Man page
MSsliceList-class	Man page
MassrangeFilter	Man page
MassrangeFilter-class	Man page
SimpleCompoundDb	Man page
SimpleCompoundDb-class	Man page
[,MSslice,ANY,ANY,ANY-method	Man page
[,MSsliceList,ANY,ANY,ANY-method	Man page
[[,MSslice,ANY,ANY-method	Man page
[[,MSsliceList,ANY,ANY-method	Man page
adductmz2mass	Man page
adductmz2mass,numeric-method	Man page
as.data.frame,SimpleCompoundDb-method	Man page
as.matrix,MSdata-method	Man page
assayData,MSslice-method	Man page
assayData<-,MSslice,ANY-method	Man page
assayData<-,MSslice-method	Man page
binMz	Man page
binMz,MSdata-method	Man page
binMz,MSslice-method	Man page
binMzRtime	Man page
binMzRtime,MSdata-method	Man page
binMzRtime,MSslice-method	Man page
binRtime	Man page
binRtime,MSdata-method	Man page
binRtime,MSslice-method	Man page
chromatogram,MSdata-method	Man page
column,CompoundidFilter,SimpleCompoundDb,character-method	Man page
column,CompoundidFilter,SimpleCompoundDb,missing-method	Man page
column,CompoundidFilter,missing,missing-method	Man page
column,MassrangeFilter,SimpleCompoundDb,character-method	Man page
column,MassrangeFilter,SimpleCompoundDb,missing-method	Man page
column,MassrangeFilter,missing,missing-method	Man page
columns,SimpleCompoundDb-method	Man page
compounds	Man page
compounds,SimpleCompoundDb-method	Man page
condition,CompoundidFilter-method	Man page
condition,MassrangeFilter-method	Man page
condition<-,CompoundidFilter-method	Man page
condition<-,MassrangeFilter-method	Man page
dbconn,SimpleCompoundDb-method	Man page
getChromatogram	Man page
getChromatogram,MSdata-method	Man page
getChromatogram,MSslice-method	Man page
getData	Man page
getData,xcmsRaw,MatrixOrNull,MatrixOrNull,MatrixOrNull-method	Man page
getData,xcmsRaw,NumericOrNull,NumericOrNull,NumericOrNull-method	Man page
getData,xcmsRaw-method	Man page
getSpectrum	Man page
getSpectrum,MSdata-method	Man page
getSpectrum,MSslice-method	Man page
grow	Man page
grow,matrix-method	Man page
grow,numeric-method	Man page
intensity,MSdata-method	Man page
intensity<-	Man page
intensity<-,MSdata-method	Man page
intrange	Man page
intrange,MSdata-method	Man page
intrange,MSslice-method	Man page
intrange,MSsliceList-method	Man page
intranges	Man page
intranges,MSsliceList-method	Man page
length,MSslice-method	Man page
length,MSsliceList-method	Man page
listTables	Man page
listTables,SimpleCompoundDb-method	Man page
mapMatrix	Man page
mapMatrix,MSdata-method	Man page
mass2adductmz	Man page
mass2adductmz,numeric-method	Man page
msData	Man page
msData,MSslice-method	Man page
msData,xcmsRaw-method	Man page
msMap,xcmsRaw-method	Man page
msSlice	Man page
msSlice,MSdata-method	Man page
msSlice,list-method	Man page
msSlice,xcmsRaw-method	Man page
msSlice,xcmsSet-method	Man page
mz,MSdata-method	Man page
mz<-,MSdata-method	Man page
mzmatch	Man page
mzmatch,matrix,SimpleCompoundDb-method	Man page
mzmatch,matrix,numeric-method	Man page
mzmatch,numeric,SimpleCompoundDb-method	Man page
mzmatch,numeric,numeric-method	Man page
mzrange,MSdata-method	Man page
mzrange,MSslice-method	Man page
mzrange,MSsliceList-method	Man page
mzranges	Man page
mzranges,MSsliceList-method	Man page
names,MSslice-method	Man page
names<-,MSslice,ANY-method	Man page
names<-,MSslice-method	Man page
pData,MSslice-method	Man page
pData<-,MSslice,ANY-method	Man page
pData<-,MSslice-method	Man page
peakGroupSummary	Man page
peakGroupSummary,xcmsSet-method	Man page
phenoData,MSslice-method	Man page
phenoData<-,MSslice,ANY-method	Man page
phenoData<-,MSslice-method	Man page
plotChromatogram	Man page
plotChromatogram,MSdata-method	Man page
plotChromatogram,MSslice-method	Man page
plotSpectrum	Man page
plotSpectrum,MSdata-method	Man page
plotSpectrum,MSslice-method	Man page
rtime,MSdata-method	Man page
rtime<-	Man page
rtime<-,MSdata-method	Man page
rtrange,MSdata-method	Man page
rtrange,MSslice-method	Man page
rtrange,MSsliceList-method	Man page
rtranges	Man page
rtranges,MSsliceList-method	Man page
scDb	Man page
scantimes	Man page
scantimes,xcmsRaw-method	Man page
show,MSdata-method	Man page
show,MSslice-method	Man page
show,MSsliceList-method	Man page
show,SimpleCompoundDb-method	Man page
slices	Man page
slices,MSsliceList-method	Man page
slices<-	Man page
slices<-,MSsliceList-method	Man page
subset,MSdata-method	Man page
subset,MSslice-method	Man page
supportedIonAdducts	Man page
supportedIonAdducts,missing,character-method	Man page
supportedIonAdducts,missing,missing-method	Man page
value,CompoundidFilter,missing-method	Man page
value,MassrangeFilter,missing-method	Man page
value<-,CompoundidFilter-method	Man page
value<-,MassrangeFilter-method	Man page
visualizeXcmsSet	Man page
where,CompoundidFilter,SimpleCompoundDb,character-method	Man page
where,CompoundidFilter,SimpleCompoundDb,missing-method	Man page
where,CompoundidFilter,missing,missing-method	Man page
where,MassrangeFilter,SimpleCompoundDb,character-method	Man page
where,MassrangeFilter,SimpleCompoundDb,missing-method	Man page
where,MassrangeFilter,missing,missing-method	Man page