In jpfitzinger/tidyfit: Regularized Linear Modeling with Tidy Data

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  echo = TRUE,
  message = FALSE,
  warning = FALSE
)

library(dplyr); library(tidyr); library(purrr) # Data wrangling
library(tidyfit) # Auto-ML modeling

Models fitted with tidyfit (e.g. using the regress() function) are stored in tidyfit.models frames, which are tibbles that contain information about multiple fitted models. Individual fitted models are stored using the tidyFit R6 class, in the model_object column of the tidyfit.models frame.

Here's a simple example:

Suppose we want to fit a hierarchical features regression (HFR) --- see here --- for different shrinkage penalties. We begin by loading Boston house price data and fitting a regression for 4 different shrinkage parameters:

data <- MASS::Boston
mod_frame <- data |> 
  regress(medv ~ ., m("hfr", kappa = c(0.25, 0.5, 0.75, 1))) |>
  unnest(settings)

# the tidyfit.models frame:
mod_frame

The model_object columns contains 4 different models (for different values of the parameter kappa). To extract one of these models, we can use the get_tidyFit() function:

# the tidyFit object:
get_tidyFit(mod_frame, kappa == 1)

Note that we can pass filters to ... (see ?get_tidyFit for more information).

The tidyFit class stores information necessary to obtain predictions, coefficients or other information about the model and to re-fit the model. It also contains the underlying model object (created by hfr::cv.hfr in this case). To get this underlying object, we can use the get_model() function:

# the underlying model:
hfr_model <- get_model(mod_frame, kappa == 0.75)
plot(hfr_model, kappa = 0.75)

kappa defines the extent of shrinkage, with kappa = 1 equal to an unregularized least squares (OLS) regression, and kappa = 0.25 representing a regression graph that is shrunken to 25% of its original size, with 25% of the effective degrees of freedom. The regression graph is visualized using the plot function.

Instead of extracting the underlying model, many generics can also be applied directly to the tidyFit object as an added convenience:

mod_frame |> 
  get_tidyFit(kappa == .25) |> 
  plot(kappa = .25)

Finally, we can use pwalk to compare the different settings in a plot:

# Store current par before editing
old_par <- par()

par(mfrow = c(2, 2))
par(family = "sans", cex = 0.7)
mod_frame |> 
  arrange(desc(kappa)) |> 
  select(model_object, kappa) |> 
  pwalk(~plot(.x, kappa = .y, 
              max_leaf_size = 2, 
              show_details = FALSE))

# Restore old par
par(old_par)

Notice how with each smaller value of kappa the height of the tree shrinks and the model parameters become more similar in size. This is precisely how HFR regularization works: it shrinks the parameters towards group means over groups of similar features as determined by the regression graph.

jpfitzinger/tidyfit documentation built on July 3, 2025, 9:55 p.m.