API for jpmeagher/vbar
Variational Bayes Ancestral Reconstruction
| Global functions | |
|---|---|
| bat_echolocation_calls | Man page |
| bat_phylogeny | Man page |
| cavi_plvm | Man page Source code |
| check_trait_type | Man page Source code |
| compare_metadata_to_df | Man page Source code |
| compute_auxiliary_trait_elbo | Man page Source code |
| compute_continuous_auxiliary_trait_elbo | Man page Source code |
| compute_individual_specific_latent_trait_elbo | Man page Source code |
| compute_individual_specific_latent_trait_expectation | Man page Source code |
| compute_individual_specific_latent_trait_precision | Man page Source code |
| compute_internal_taxon_specific_latent_trait_expectation | Man page Source code |
| compute_internal_taxon_specific_latent_trait_precision | Man page Source code |
| compute_latent_trait_elbo | Source code |
| compute_loading_elbo | Man page Source code |
| compute_loading_expectation | Man page Source code |
| compute_loading_row_conditional_mean_weight_matrix | Man page Source code |
| compute_loading_row_precision | Man page Source code |
| compute_loading_row_precision_list | Man page Source code |
| compute_nominal_auxiliary_trait_elbo | Man page Source code |
| compute_ordinal_auxiliary_trait_elbo | Man page Source code |
| compute_plvm_elbo | Man page Source code |
| compute_scaled_conditional_row_variance_vector | Man page Source code |
| compute_taxon_specific_latent_trait_elbo | Man page Source code |
| compute_terminal_taxon_specific_latent_trait_expectation | Man page Source code |
| compute_terminal_taxon_specific_latent_trait_precision | Man page Source code |
| exp_quad_kernel | Man page Source code |
| gaussian_outer_product_expectation | Man page Source code |
| heritable_amplitude_objective | Man page Source code |
| initialise_auxiliary_traits | Man page Source code |
| initialise_individual_specific_latent_traits | Man page Source code |
| initialise_loading | Man page Source code |
| initialise_loading_ard_precision | Man page Source code |
| initialise_plvm | Man page Source code |
| initialise_precision | Man page Source code |
| map_precision_to_auxiliary_traits | Man page Source code |
| nominal_inverse_link | Man page Source code |
| nominal_link | Man page Source code |
| nominal_probit_auxiliary_expectation | Man page Source code |
| nominal_probit_normalising_constant | Man page Source code |
| ordinal_inverse_link | Man page Source code |
| ordinal_link | Man page Source code |
| ordinal_probit_normalising_constant | Man page Source code |
| ordinal_trait_cut_off_objective | Man page Source code |
| ou_kernel | Man page Source code |
| reparameterise_phylogenetic_ou | Man page Source code |
| scale_phylo | Man page Source code |
| simulate_phylogenetic_ou | Man page Source code |
| specify_manifest_trait_metadata | Man page Source code |
| synthetic_trait_model_specification | Man page |
| synthetic_traits | Man page |
| update_discrete_auxiliary_traits | Man page Source code |
| update_loading_ard_precision | Man page Source code |
| update_precision | Man page Source code |
| variational_ancestral_reconstruction | Man page Source code |
| within_taxon_amplitude_objective | Man page Source code |
