API for jpromeror/EventPointer
An effective identification of alternative splicing events
using junction arrays and RNA-Seq data
| Global functions | |
|---|---|
| %in2% | Man page |
| AllEvents_RNASeq | Man page |
| AllEvents_RNASeq_MP | Man page |
| AnnotateEvents_KLL | Man page Source code |
| AnnotateEvents_RNASeq | Man page Source code |
| AnnotateEvents_RNASeq_MultiPath | Man page Source code |
| ArrayDatamultipath | Man page |
| ArraysData | Man page |
| CDFfromGTF | Man page Source code |
| CDFfromGTF_Multipath | Man page Source code |
| ClassifyEvents | Man page Source code |
| CreateExSmatrix | Man page Source code |
| CreateSequenceforProbe | Man page Source code |
| EventDetection | Man page Source code |
| EventDetectionMultipath | Man page Source code |
| EventDetection_transcriptome | Man page Source code |
| EventPointer | Man page Source code |
| EventPointer_Bootstraps | Man page Source code |
| EventPointer_IGV | Man page Source code |
| EventPointer_RNASeq | Man page Source code |
| EventPointer_RNASeq_IGV | Man page Source code |
| EventPointer_RNASeq_TranRef | Man page Source code |
| EventPointer_RNASeq_TranRef_IGV | Man page Source code |
| EventXtrans | Man page |
| Events_ReClassification | Man page Source code |
| FindPrimers | Man page Source code |
| Fit | Man page |
| GetCounts | Man page Source code |
| GetCountsMP | Man page Source code |
| GetIGVPaths | Man page Source code |
| GetPSI_FromTranRef | Man page Source code |
| GseaApproach | Man page Source code |
| IHsummarization | Man page Source code |
| InternalFunctions | Man page |
| MatrixRes | Man page Source code |
| MyPrimers | Man page |
| MyPrimers_taqman | Man page |
| PSI_Statistic | Man page Source code |
| PSIss | Man page |
| PrepareBam_EP | Man page Source code |
| PrepareCountData | Man page Source code |
| PrepareOutput | Man page Source code |
| PrepareProbes | Man page Source code |
| PrimerSequenceCommonFor | Man page Source code |
| PrimerSequenceCommonRev | Man page Source code |
| PrimerSequenceGeneral | Man page Source code |
| PrimerSequenceTwo | Man page Source code |
| ProbesSequence | Man page Source code |
| Protein_Domain_Enrichment | Man page Source code |
| ResulTable | Man page Source code |
| SF_Prediction | Man page Source code |
| SG_Info | Man page Source code |
| SG_RNASeq | Man page |
| SG_creation | Man page Source code |
| SG_creation_RNASeq | Man page Source code |
| SG_creation_fast | Man page Source code |
| SG_reclassify | Man page |
| TxD | Man page |
| Wilcoxon.z.matrix | Man page Source code |
| WilcoxonApproach | Man page Source code |
| WriteGTF | Man page Source code |
| WriteGTF_RNASeq | Man page Source code |
| all_simple_paths2 | Man page Source code |
| annotate2 | Man page Source code |
| annotateEvents | Man page Source code |
| annotateEventsMultipath | Man page Source code |
| annotateFeatures2 | Man page Source code |
| calculateCorrelationTest | Man page Source code |
| callGRseq_parallel | Man page Source code Source code |
| callPrimer3 | Man page |
| callPrimer3probes | Man page |
| call_get_table_Bootstrap | Man page Source code |
| checkContrastDesignMatrices | Man page Source code |
| comprobaciontranscritos2 | Source code |
| control_2 | Man page Source code |
| convertToSGFeatures2 | Man page Source code |
| dgl | Man page Source code |
| estimateAbsoluteConc | Man page Source code |
| estimateAbsoluteConcmultipath | Man page Source code |
| filterimagine | Man page Source code |
| findPotencialExons | Man page Source code |
| findTriplets | Man page Source code |
| findTriplets2 | Man page Source code |
| fitgl | Man page Source code |
| flat2Cdf | Man page Source code |
| fullExons | Man page Source code |
| genreverse | Man page Source code |
| getDistanceseachPath | Man page Source code |
| getDominants2 | Man page Source code |
| getDominantsFor | Man page Source code |
| getDominantsRev | Man page Source code |
| getEventMultiPaths | Man page Source code |
| getEventPaths | Man page Source code |
| getExonsFullSignal | Man page Source code |
| getFinalExons | Man page Source code |
| getInfo | Man page Source code |
| getPSI | Man page Source code |
| getPSI_RNASeq | Man page Source code |
| getPSI_RNASeq_MultiPath | Man page Source code |
| getPSImultipath | Source code |
| getPathCounts | Man page Source code |
| getPathCountsMP | Man page Source code |
| getPathFPKMs | Man page Source code |
| getPathFPKMsMP | Source code |
| getRandomFlow | Man page Source code |
| get_YB | Man page Source code |
| get_beta | Man page Source code |
| get_table | Man page Source code |
| get_table_Bootstrap | Man page Source code |
| getbootstrapdata | Man page Source code |
| getgeneraldata | Man page Source code |
| getpij | Man page Source code Source code |
| getrankexons | Man page Source code |
| getranksequence | Man page Source code |
| hyperGeometricApproach | Man page Source code |
| hyperMatrixRes | Man page Source code |
| includeaexons | Man page Source code |
| is.sparse_2 | Man page Source code |
| mclapplyPSI_Bootstrap | Man page Source code |
| mergeExonsTerminal2 | Man page Source code |
| myphyper | Man page Source code |
| pdist2 | Man page Source code |
| pgl | Man page Source code |
| poissonBinomialApproach | Man page Source code |
| processFeatures2 | Man page Source code |
| pvalue_incr_PSI | Man page |
| qdgl | Man page Source code |
| qgl | Man page Source code |
| reclasify_intern | Man page Source code |
| rgl | Man page Source code |
| sacartranscritos | Man page Source code |
| significanceFunction | Man page Source code |
| sort.exons | Man page Source code |
| speedglm.wfit2 | Man page |
| transfromedge | Man page Source code |
| uniquefast | Man page Source code |
