Man pages for jproney/bpinference
Bayesian Estimation of Branching Proccess Parameters
| bp | Simulate multi-type Markov branching process |
| bp_model | User-friendly function to construct a new valid 'bpm' object |
| bp_model_simple_birth_death | Convenience constructor for building a simple 1-type... |
| bpsims | Simulate multi-type Markov branching process where process... |
| calculate_moments | Computes the first and second moments of the the joint... |
| check_valid | takes simple mathematical R expressions and determines... |
| create_stan_data | function to generate a stan input list from population data |
| exp_to_stan | takes simple mathematical R expressions and turns them into a... |
| generate | Generate a Stan file for inferring the model parameters |
| new_bp_model | model class that can be used for inference and simulation... |
| new_prior_dist | Creates a new 'prior_dist' object |
| parse_prior | parses prior object into a prior statement that can be... |
| prior_dist | User-facing constructor for new 'prior_dist' objects |
| stan_data_from_simulation | Helper function for piping simulation output into inference... |
| uniform_initialize | create Stan initialization list by selecting initial values... |
| validate_bp_model | function to determine whether an object is a valid instance... |
| validate_prior_dist | function to make sure a 'prior_dist' object actually encodes... |
