create_stan_data: function to generate a stan input list from population data

In jproney/bpinference: Bayesian Estimation of Branching Proccess Parameters

Description

function to generate a stan input list from population data

Usage

create_stan_data(model, final_pop, init_pop, times, c_mat = NA,
  simple_bd = FALSE)

Arguments

model	The branching process model being estimated
final_pop	Population vectors at end of each run. Dimensions ndatapts x ntypes
init_pop	= population at beginning of each run. Dimensions ndatapts x ntypes
times	= the length of time elapsing between each initial population and each final population. dimensions ndatapts x 1
c_mat	= matrix of dependent variables that vary from run to run. Dimensions ndatapts x ndep
simple_bd	= logical value indicating whether or not the model is a simple birth-death process. If TRUE, a simpler data list will be returned

Value

A data list to pass to the Stan sampling function

jproney/bpinference documentation built on April 19, 2021, 2:18 a.m.