plotES: A function for plotting enrichment scores after GSEA
In jr-leary7/jackknife: Bioinformatics and General Time-Saving Functions
Description
Usage
Arguments
Examples
View source: R/plotEnrichmentScores.R
Description
This function returns a list of enrichment plots after running GSEA using the 'fgsea' package
Usage
1
plotES(gene.set.list, num.plots, fgsea.res, ranks)
Arguments
ranks
The ranks obtained from running fgsea()
geneSetLists
A list of gene sets
numPlots
The number of plots you wish to generate
fgseaRes
The results obtained from runnning fgsea()
Examples
1
plotES(gene.set.list = gene_list, num.plots = 5, fgsea.res = my_results, ranks = my_ranks)
jr-leary7/jackknife documentation built on April 19, 2021, 2:18 a.m.
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Description Usage Arguments Examples
View source: R/plotEnrichmentScores.R
Description
This function returns a list of enrichment plots after running GSEA using the 'fgsea' package
Usage
1 | plotES(gene.set.list, num.plots, fgsea.res, ranks)
|
Arguments
ranks |
The ranks obtained from running fgsea() |
geneSetLists |
A list of gene sets |
numPlots |
The number of plots you wish to generate |
fgseaRes |
The results obtained from runnning fgsea() |
Examples
1 | plotES(gene.set.list = gene_list, num.plots = 5, fgsea.res = my_results, ranks = my_ranks)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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