Depend on mkin (>= 1.0.2) which preserves model names stored in 'mkinmod' objects, which were overwritten starting from mkin 1.0.0
Remove option to plot during fit, as mkin does not have this functionality any more
Another update of the 'FOCUS_2006' workspace to satisfy gmkin on windows
Adapt built-in 'FOCUS_2006' workspace to mkin 1.0.x as we have now have the 'deg_func' element in 'mkinmod' objects
The three HOWTO tests in the manual pass
Adapt to mkin 0.9.49.6, making the new way to fit variance by variable and the two-component error model available to gmkin
Use devEMF for better vector graphics export for Windows
Manual weighting is not possible as this functionality is currently not present in mkin versions > 0.9.48.1
Activate the button "Keep changes" as soon as a dataset title is entered in the dataset editor so entered data can be kept.
Entering "x" into an input field triggered saving the file due to a peculiarity of the GAction implementation in gWidgetsWWW2. The keybinding was changed to "Shift-F12" (see below).
When data was entered manually, sometimes it could not be fitted as the override column was of type "character" instead of "numeric".
The project file is now immediately shown with its full path in the project editor window after saving a file.
Do not show widgets for fit options in 'Configuration' tab when not fit is configured. Also inactivate the run button and show a message telling the user what to do to configure a fit.
When configuring a fit using a model with use_of_ff = 'max', this was ignored when the model was loaded from a project file
The configure button was not disabled when switching a project (which clears model and dataset selections)
Removed the 'Add' and 'Remove' buttons from the data editor, as adding rows leads to a corrupt state of the GUI
The button 'Keep changes' now asks if the currently selected model should be overwritten if the name was not changed
In the model editor, the combobox for the 'to' field did not accept to be empty after holding a selection
Some graphical errors in the model gallery were fixed
Importing data in wide format corrupted the array of observed variables as mkin_wide_to_long
returns 'name' as a factor
Make it possible to export model predictions as CSV
Bugfix on windows: Start a windows graphics device for plotting during the fit if none is active to avoid an error
Only tell the user that the fit can be aborted in the R console when gmkin is running in an interactive R session
Completely rewritten user interface with a three column layout
Introduce project management with the possibility to move datasets and models
Tabbed viewing area on the right, with workflow graph, data editor, the manual and changes in gmkin (this file)
Introduction of a workspace object as an R6 class 'gmkinws'
Simplify model specification by using a combobox with multiple selection for specifiying target variables (metabolites, target compartments)
Introduce a model gallery (loaded when the tab is selected the first time, as it loads slowly)
Updates to DESCRIPTION and README.md
man/gmkin.Rd: Do not mark gmkin as being experimental any more
Port
Prevent loading old gmkin workspace files created with mkin < 0.9-32 as they do not load properly
Fix saving summary files. They were all saved under the same name without a warning
First version installable from the package repository on r-forge
New vignette gmkin_manual
Small improvements in the model editor
Make Port
and SANN
optimisation algorithms from FME available to gmkin, in addition to the default algorithm Marq
Make it possible to specify the maximum number of iterations for these algorithms
Provide the possibility to save summaries as text file
Option to show the fitting process in a separate plot device, default is not to
Add an inital message explaining the use of the target input box of the model editor
Sorting in the fit table now works correctly also for more than 9 fits
The fit table was not always updated (e.g. after deleting a fit) due to a bug introduced while fixing the bug above
The statusbar message was improved
This NEWS file was added, in markdown format for viewing on github
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