sym_PI: Simulate and plot a _Symbiodinium_ PI curve.
In jrcunning/coRal: Dynamic bioenergetic modeling of coral-Symbiodinium symbioses
Description
Usage
Arguments
Value
Examples
Description
Given a set of parameters defining Symbiodinium photobiology (e.g.,
yCL, jCPm, kROS, kNPQ, k), sym_PI calculates and plots the rate of
photosynthesis (jCP), NPQ (jNPQ), and ROS production (cROS) as a function of
irradiance. This simulation is meant to show the photosynthetic performance
of a given symbiont independent from a host (i.e., in a state that is not
influenced by host carbon-concentrating mechanisms), so the "jCO2" parameter
is set at a very high value.
Usage
1
Arguments
pars
A list of model parameters to use in the simulation, i.e. the
object returned by def_pars.
draw
Whether to plot PI curve (TRUE or FALSE)
Value
A data frame with simulation results at each time step.
Examples
1
jrcunning/coRal documentation built on March 24, 2021, 1:28 a.m.
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Description Usage Arguments Value Examples
Description
Given a set of parameters defining Symbiodinium photobiology (e.g.,
yCL, jCPm, kROS, kNPQ, k), sym_PI calculates and plots the rate of
photosynthesis (jCP), NPQ (jNPQ), and ROS production (cROS) as a function of
irradiance. This simulation is meant to show the photosynthetic performance
of a given symbiont independent from a host (i.e., in a state that is not
influenced by host carbon-concentrating mechanisms), so the "jCO2" parameter
is set at a very high value.
Usage
1 |
Arguments
pars |
A list of model parameters to use in the simulation, i.e. the
object returned by |
draw |
Whether to plot PI curve (TRUE or FALSE) |
Value
A data frame with simulation results at each time step.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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