Description Usage Arguments Details Value See Also
Plot posterior median of trend parameters and associated credible intervals.
1 2 3 4 5 |
theta |
A list generated by |
mfit |
An object containing posterior draws from a |
obstype |
Name of probability distribution of observations. This controls the back-transformation of the process parameters. Possible obstypes are 'normal', 'poisson', 'binomial', or 'coalescent'. Assumed link functions are the log for 'poisson' and 'coalescent', and logit for 'binomial'. |
alpha |
Controls level for 100*(1- |
obsvar |
Vector of observations. Assumed to be ordered by time with one observation per time point. If |
uxvar |
vector of unique values of the grid locations of the trend parameters. This can be a numeric or integer vector. Must be the same length as |
xvar |
x-variable for plotting observations |
colset |
Color set for trend and credible intervals. These are presets chosen with common color combinations. Choices are 'blue', 'purple', 'red', 'green', and 'gray'. This parameter is overridden If |
trend.col |
Color of the trend line. Any standard |
bci.col |
Color of the credible interval band. Any standard |
pt.col |
Color of data points if plotted with |
pt.pch |
Type of points to use if data plotted with |
pt.cex |
Size of points to use if data plotted with |
ylab |
Character string describing label for y-axis. Default is "y" if unspecified. |
xlab |
Character string describing label for x-axis. Default is "x" if unspecified. |
main |
Character string describing label for main title. Default is "" empty string. |
ylim |
Numeric vector with two elements describing limits of y-variable. Default is |
xlim |
Numeric vector with two elements describing limits of x-variable. Default is |
... |
Additional parameters passed to the |
The input can be either in the form of a list generated by the extract_theta
function (passed in as the theta
variable) or as a raw model fit object from spmrf
or rstan
(passed in as mfit
). Note that using mfit
is more computationally costly than using theta
because the extract_theta
function is called when mfit
is specified.
Returns a plot
object.
plot
, points
, extract_theta
, spmrf
, stanfit
, array
, matrix
, data.frame
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