README.md

In jrminter/rpemepma: Processing of data from PENEPMA simulations using R

rpenepma

A package to process output from PENEPMA using R

How to install and use

1. Install R for your operating system from here. Note: if you are running Windows, install the Rtools that let you build packages. You will want the Rtools binaries in your path. On systems where I have admin rights, I create C:\Apps, make it writable for all users, and install R and Rtools in a C:\Apps\R folder. You want the Rtools binaries in your path and this keeps the path shorter. If you do not have admin rights, make an Apps folder in your home folder and install there...

2. Install the git version control software for your operating system from here. It works well with RStudio (below).

3. Install R-Studio from here. The preview releases are the most up-to-date versions. It is a great development environment and will make your life a lot easier...

4. Install the devtools package and the dependencies from the R terminal in RStudio.

install.packages("devtools", dependencies=TRUE)
install.packages("ggplot2", dependencies=TRUE)
install.packages("ramify", dependencies=TRUE)
install.packages("scales", dependencies=TRUE)

Then you can use the devtools package to install rpenepma.

devtools::install_github("jrminter/rpenepma")

There are a couple of vignettes that show how to use the package. You can view them by:

browseVignettes(package="rpenepma")

You can get help by typing

?penepma_plot_spectrum
?penepma_plot_spectrun_logy
?penepma_to_msa
?calculate_penepma_z_shifts

jrminter/rpemepma documentation built on May 29, 2019, 11:43 a.m.