Man pages for jrminter/rpemepma
Processing of data from PENEPMA simulations using R
| calculate_penepma_z_shifts | Calculate a list of penepma z-shifts given a list of layer... |
| cm_to_nm | Convert cm to nm for processing PENEPMA data |
| elemental_densities | Densities for the elements. |
| estimate_simulation_finish_time | Estimate the finish time for a simulation, given a prior... |
| get_atomic_symbol_from_z | Get the atomic symbol from Z |
| get_penepma_spectra_info | Retrieve the spectrum information from a PENEPMA spectrum |
| nm_to_cm | Convert nm to cm for processing PENEPMA data |
| penepma12_get_number_of_showers | Retrieve the number of showers from a penepma12 simulation |
| penepma16_read_map_data | penepma16_read_map_data - read the pe-map-0#-depth.dat file... |
| penepma16_read_map_hdr | penepma16_read_map_hdr - read the pe-map-0#-depth.dat file... |
| penepma_calc_k_ratio | Calculate the k-ratio from penepma intensities |
| penepma_copy_list_of_files | Copy a list of files from simulation to analysis directory |
| penepma_geo_add_body | Add a body |
| penepma_geo_add_surf_cyl | Add a cylindrical surface |
| penepma_geo_add_surf_z | Add a Z surface |
| penepma_geo_fini | penepma_geo_finish the geo file |
| penepma_geo_hdr_0 | Create a header line of repeated zeros. |
| penepma_geo_hdr_c | Create a header line with just 'C' |
| penepma_geo_hdr_cmt | Create a header line with a comment |
| penepma_geo_hdr_x | Create a header line of repeated x |
| penepma_get_ev_per_ch | Retrieve the ev/ch from a PENEPMA spectrum |
| penepma_get_intensities | Retrieve the intensities from a PENEPMA spectrum |
| penepma_get_intensity_z_s0_s1 | Retrieve the intensity and uncertainty for a specified... |
| penepma_get_max_primary_intensity_z | Retrieve the maximum primary intensity and uncertainty for an... |
| penepma_get_max_total_intensity_z | Retrieve the maximum total intensity qnd uncertqainty for an... |
| penepma_get_number_of_showers | Retrieve the number of showers from a penepma simulation |
| penepma_get_prz_data | Retrieve the phi rho z data from a line in a penepma... |
| penepma_get_total_intensity_z_transition | Retrieve the maximum total intensity qnd uncertqainty for an... |
| penepma_measure_simulation_time | Measure the simulation time of a penepma simulation |
| penepma_plot_spectrum | Plot a PENEPMA spectrum file |
| penepma_plot_spectrum_logy | Plot a PENEPMA spectrum file with a log Y scale |
| penepma_read_raw_data | Retrieve the raw channel data from a PENEPMA spectrum. |
| penepma_report_rel_unc | A tidy retrieval of the relative uncertainty of a transition... |
| penepma_to_msa | Convert a PENEPMA spectrum file to MSA format |
| poll_penepma16_res | Periodically poll the penepma-res.dat file and generate a... |
| prepend_sample_id_max_int_tib | Prepend a sample ID to a maximum intensity tibble |
| proc_penepma16_res | Get the time, number of trajectories, and relative... |
| prz_wrapper | Get the data we need to plot a prz curve |
| pypenelope_get_number_of_showers | Retrieve the number of showers from a pypenelope simulation |
| sec_to_hr | A convenience funtion to convert seconds to hrs |
| sec_to_min | A convenience funtion to convert seconds to minutes |
| test_penepma16_res | Find the lines containing simulation time, number of... |
