GetNonNeutralLoci: GetNonNeutralLoci

In jrobledob/SSBayesCH: What the Package Does (One Line, Title Case)

Description

Performs selection of marker loci with extreme estimated Fst values using the approach developed by Gianola et al. (2010).

Usage

GetNonNeutralLoci(PostMeansFull,NullSamples,tailp)

Arguments

PostMeansFull	Vector of dimension equal to the number of markers containing estimated posterior means of Fst under the 'full model'.
NullSamples	Matrix of dimension (number of markers) X N.Samples containing the Monte Carlo samples from the posterior distribution of Fst under the 'null model'.
tailp	Numeric value indicating the tail probability used to declare a value as extreme under the null posterior distribution of Fst.

Value

A list containing the following objects. CandidateLoci: A vector with the selected markers. The ID's correspond to the sequential number of the marker matching their order in the columns of the input dataset. N.CandidateLoci: Integer indicating the number of selected markers.

Author(s)

Carlos Alberto Martínez Niño ([e-mail]).

References

Gianola, D., Simianer, H., Qanbari, S. 2010. A two-step method for detecting selection signatures using genetic markers. Genetic Research Cambridge, 92; 141-155.

jrobledob/SSBayesCH documentation built on Dec. 21, 2021, 3:15 a.m.