ewascatalog: ewascatalog

In jrs95/ewascatalog: R package to query the EWAS Catalog from R

Description

ewascatalog queries the EWAS Catalog from R.

Usage

ewascatalog(cpgquery = NULL, regionquery = NULL, genequery = NULL,
  traitquery = NULL)

Arguments

cpgquery	a vector of CpG sites.
regionquery	a vector of genomic regions.
genequery	a vector of gene names.
traitquery	a vector of trait names.

Value

Data frame of EWAS Catalog results.

Author(s)

James R Staley <[e-mail]>

Examples

# CpG
res <- ewascatalog(cpgquery="cg00029284")

# Region
res <- ewascatalog(regionquery="6:15000000-25000000")

# Gene
res <- ewascatalog(genequery="FTO")

# Trait
res <- ewascatalog(traitquery="body mass index")

jrs95/ewascatalog documentation built on Sept. 19, 2021, 9:56 a.m.