get_mds: get_mds

In jrthompson54/DGE.Tools2: A function library to facilitate Differential Gene Expression Analysis

Description

Get a table of MDS values, with proper column names.

Usage

get_mds(x, k, ...)

Arguments

x	The object to run [limma::plotMDS()] on.
k	The number of MDS dimensions to return. If not specified, the maximum possible number will be returned.
...	Additional arguments to [limma::plotMDS()].

Details

This runs [limma::plotMDS()], but suppresses the generation of the plot and instead returns the MDS dimensions in a matrix.

Value

A matrix with 'k' columns, and 'ncol(x)' rows containing the MDS dimensions, with each column named "DimN", where N is the number of that dimension.

Author(s)

Ryan Thompson, [e-mail]

Examples

# TODO Steal from plotMDS

jrthompson54/DGE.Tools2 documentation built on May 12, 2021, 8:47 p.m.