plotEmbedding: plotEmbedding

In js2264/SCTools: Utilities and plotting tools for scRNAseq processing

Description

Plot gene expression in embedded space

Usage

plotEmbedding(
  sce,
  by,
  dim = "UMAP",
  q = 0.95,
  average_expr = FALSE,
  only_average = FALSE,
  assay.type = "logcounts",
  theme.args = NULL,
  return_plotlist = FALSE
)

Arguments

sce
by
dim
q
average_expr
only_average
assay.type
theme.args
return_plotlist

Value

plot

js2264/SCTools documentation built on July 11, 2021, 11:17 p.m.