get_dataset_expression_for_genes | R Documentation |
Retrieve the expression data matrix of a set of datasets and genes
get_dataset_expression_for_genes(
datasets,
genes,
keepNonSpecific = FALSE,
consolidate = NA_character_,
raw = getOption("gemma.raw", FALSE),
memoised = getOption("gemma.memoised", FALSE),
file = getOption("gemma.file", NA_character_),
overwrite = getOption("gemma.overwrite", FALSE)
)
datasets |
A numerical dataset identifier or a dataset short name |
genes |
An ensembl gene identifier which typically starts with ensg or an ncbi gene identifier or an official gene symbol approved by hgnc |
keepNonSpecific |
logical. |
consolidate |
An option for gene expression level consolidation. If empty, will return every probe for the genes. "pickmax" to pick the probe with the highest expression, "pickvar" to pick the prove with the highest variance and "average" for returning the average expression |
raw |
|
memoised |
Whether or not to save to cache for future calls with the
same inputs and use the result saved in cache if a result is already saved.
Doing |
file |
The name of a file to save the results to, or |
overwrite |
Whether or not to overwrite if a file exists at the specified filename. |
A list of data frames
get_dataset_expression_for_genes("GSE2018", genes = c(10225, 2841))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.