README.md

In jskufca/sleeprutil: Utilities for NIH (SLEEPR) grant

sleeprutil

The goal of sleeprutil is to facilitate data aggregation into the redcap database used for the NIH funded SLEEPR grant.

Changes to these files are required when updates are made to the underlying Redcap database where the SLEEPR data is stored.

Installation

You can install the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("jskufca/sleeprutil")

Example Usage

Processing of PAL data

The PAL device will record activity information, which can then be output as a .csv file. That file will need to be processed so that it is in the proper templated format for the Redcap database.

Suppose the data is stored in file this_pal.csv. Then executing the following code:

library(sleeprutil)
template_pal_data()

Will open a dialogue box that allows the user to select the PAL file. The function will then create an associated csv file, stored as

{this_pal_templated.csv}

Processing oximetry data file

The oximetry data is typically provided as a pdf file. Suppose this file is named this_oxi.pdf. Then executeing the following code:

template_oxi_data()

Will open a dialogue box that allows the user to select the oxi pdf file. The function will then create an associated csv file, stored as

{this_oxi_templated.csv}

jskufca/sleeprutil documentation built on July 1, 2022, 12:32 p.m.