Man pages for jsocolar/flocker
Flexible Occupancy Estimation with Stan
| example_flocker_model_single | Example single-season flocker model |
| fitted_flocker | Posterior predictive distributions for modeled probabilities |
| flock | Fit an occupancy model |
| flocker_stancode | Generate stan code for an occupancy model |
| flocker_standata | Generate stan data for an occupancy model |
| get_flocker_prior | Get prior for occupancy model |
| get_Z | Get posterior distribution of the Z matrix |
| log1m_inv_logit | Numerically stable log one-minus inverse logit |
| log_inv_logit | Numerically stable log inverse logit |
| log_lik_flocker | Compute unit-wise or series-wise log-likelihood matrix for a... |
| loo_compare_flocker | LOO comparisons for flocker models. |
| loo_flocker | Compute loo for flocker_fit objects |
| make_flocker_data | Format data for occupancy model with 'flock()'. |
| make_flocker_data_augmented | Format data for data-augmented occupancy model, to be passed... |
| make_flocker_data_dynamic | Format data for dynamic (multi-season) occupancy model, to be... |
| make_flocker_data_static | Format data for single-season occupancy model, to be passed... |
| predict_flocker | Get posterior predictions from a flocker model |
| simulate_flocker_data | Simulate data for use with 'make_flocker_data()' and... |
| standard_mfd_checks | input checking for make_flocker_data |
