make_flocker_data_augmented: Format data for data-augmented occupancy model, to be passed...
In jsocolar/flocker: Flexible Occupancy Estimation with Stan

make_flocker_data_augmented

R Documentation

Format data for data-augmented occupancy model, to be passed to `flock()`.

Format data for data-augmented occupancy model, to be passed to flock().

make_flocker_data_augmented(
  obs,
  n_aug,
  site_covs = NULL,
  event_covs = NULL,
  quiet = FALSE,
  newdata_checks = FALSE
)

`obs`	An I x J x K array where rows I are sites, columns J are repeat sampling events, and slices K are species. Allowable values are 1 (detection), 0 (no detection), and NA (no sampling event). The data must be formatted so that all NAs are trailing within their rows.
`n_aug`	Number of pseudospecies to augment
`site_covs`	A dataframe of covariates for each site that are constant across repeated sampling events.
`event_covs`	A named list of I x J matrices, each one corresponding to a covariate that varies across repeated sampling events within sites
`quiet`	Hide progress bars and informational messages?
`newdata_checks`	If TRUE, turn off checks that must pass in order to use the data for model fitting, but not in other contexts (e.g. making predictions or assessing log-likelihoods over new data).