flowUtil-package: Utilities for flow cytometry data

In jspidlen/flowUtils: Utilities for flow cytometry

Description

This package includes functions to import gates, transformations and compensations defined in compliance with Gating-ML specification version 1.5 and 2.0. This package depends on the flowCore package for methods to evaluate the Gating-ML files read into the workspace.

The main features of this package provide compatability to the data standards defined by the Gating-ML specification version 1.5 and 2.0.

The package also includes a Test Suite, which allows the user to test whether the implmentation of gates an, transformations are in compliance with the Gating-ML standard.

Author(s)

Maintainer: Josef Spidlen <[e-mail]>

Authors: J. Spidlen, N. Gopalakrishnan, F. Hahne, B. Ellis, R. Gentleman, M. Dalphin, N. Le Meur, B. Purcell

References

Spidlen J, ISAC DSTF, Brinkman RR. 2014.
Gating-ML 2.0. International Society for Advancement of Cytometry (ISAC) standard for representing gating descriptions in flow cytometry.
http://flowcyt.sf.net/gating/20141009.pdf
http://flowcyt.sf.net/gating/20141009.full.zip

Spidlen J, Leif RC, Moore W, Roederer M, ISAC DSTF, Brinkman RR. 2008.
Gating-ML: XML-based gating descriptions in flow cytometry.
Cytometry A. 2008 Dec; 73A(12):1151–7. doi: 10.1002/cyto.a.20637.

Spidlen J, ISAC DSTF, Brinkman RR. 2008.
Gating-ML Candidate Recommendation for Gating Description in Flow Cytometry version 1.5.
http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.pdf
http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.full.zip
http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.Compliance-tests.081030.zip

See Also

flowCore

jspidlen/flowUtils documentation built on Nov. 4, 2019, 3:25 p.m.