counts2PCA | PCA of voom-transformed counts. |
distGO | Compare semantic similarity of GO. |
makeBinarySig | Convert p-values to binary significance calls |
means4heatmap | Get group means |
modulesByConnectivity | Find modules that have high connectivity |
pipeDESeq2 | A pipeline for DESeq2 |
pipeLIMMA | A pipeline for LIMMA. |
pipeTopGO | Run gene ontology enrichment analyses |
pqHists | P- and q-value distributions plotted side-by-side |
reportPi0 | Get pi0 from P-values |
testHeterosis | Bin genes by heterosis categories |
volcanoPair | Scatter plot of log2 fold changes. |
volcanoPlot | Volcano plot. |
wgcna2igraph | Generate an igraph object from wgcna output |
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