cross: The P. virgatum GxE 4-way cross object
In jtlovell/pvGxE: R data analytics for the P. virgatum GxE project
Description
A dataset containing the R/qtl cross object. It includes the following
The genotype matrix, where markers have been culled using
qtlTools::repPickMarkerSubset to choose the best markers that are
<1cM apart.
The conditional genotype probabilities calculated with a step
of 1 and a stepwidth function of max. Error probability here and elsewhere
is set at 0.001 and the map function is "kosambi"
The imputed genotypes with the same parameters as the conditional
genotype probabilities and 64 draws.
Usage
1
Format
A R/qtl cross object with 392 individual and 744 markers.
jtlovell/pvGxE documentation built on May 20, 2019, 3:14 a.m.
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Description
A dataset containing the R/qtl cross object. It includes the following
The genotype matrix, where markers have been culled using qtlTools::repPickMarkerSubset to choose the best markers that are <1cM apart.
The conditional genotype probabilities calculated with a step of 1 and a stepwidth function of max. Error probability here and elsewhere is set at 0.001 and the map function is "kosambi"
The imputed genotypes with the same parameters as the conditional genotype probabilities and 64 draws.
Usage
1 |
Format
A R/qtl cross object with 392 individual and 744 markers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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