Files in jtvanleuven/Stickbreaker
Fits Stickbreaking, Multiplicative and Additive Models to Data
.Rbuildignore
.Rproj.user/D12B083C/cpp-definition-cache
.Rproj.user/D12B083C/pcs/debug-breakpoints.pper
.Rproj.user/D12B083C/pcs/files-pane.pper
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.Rproj.user/D12B083C/saved_source_markers
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.Rproj.user/D12B083C/sdb/prop/F29359A7
.Rproj.user/D12B083C/sdb/prop/INDEX
.gitignore
DESCRIPTION
NAMESPACE
R/batch_analysis_fnxs.R
R/d_estimation_fnxs.R
R/fnxs_general.R
R/model_fitting_functions.R
R/model_selection_functions.R
R/simulate_data_fnxs.R
Stickbreaker.Rproj
data/Chou.data.csv
data/Chou.data.rda
data/Khan.data.csv
data/Khan.data.rda
data/burns.data.rda
data/caudle.data.rda
inst/doc/Stick-vignette.html
inst/doc/Stick-vignette.pdf
inst/extdata/Add_batch_out_3muts.txt
inst/extdata/Add_batch_out_test_3muts.txt
inst/extdata/Add_batch_out_test_4muts.txt
inst/extdata/Add_batch_out_test_5muts.txt
inst/extdata/Mult_batch_out_test_3muts.txt
inst/extdata/Mult_batch_out_test_4muts.txt
inst/extdata/Mult_batch_out_test_5muts.txt
inst/extdata/Stick_batch_out_test_seq_3muts.txt
inst/extdata/Stick_batch_out_test_seq_4muts.txt
inst/extdata/Stick_batch_out_test_seq_5muts.txt
inst/extdata/Test_simulated_fit_data_4muts.txt
inst/extdata/Test_simulated_fit_data_4muts_wPosts.csv
inst/extdata/Training_simulated_priors_fit_burns2_data.txt
inst/extdata/Training_simulated_priors_fit_caudle_data.txt
inst/extdata/Training_simulated_priors_fit_data_3muts.txt
inst/extdata/Training_simulated_priors_fit_data_4muts.txt
inst/extdata/Training_simulated_priors_fit_data_5muts.txt
inst/extdata/Training_simulated_priors_fit_data_first_last5muts.txt
inst/extdata/simulated_data_from_priors_Test.txt
inst/figures/Caudle_and_Burns_datafit_fig.pdf
inst/figures/Ex_fit_vs_effect_plot.svg
inst/figures/Ex_pred_obs_fit.svg
inst/models/nnet_mod_R2_P_3muts.rda
inst/models/nnet_mod_R2_P_4muts.rda
inst/models/nnet_mod_R2_P_5muts.rda
inst/models/nnet_mod_R2_P_5muts_first_last_5muts.rda
inst/models/nnet_mod_R2_P_burns2.rda
inst/models/nnet_mod_R2_P_caudle.rda
man/Khan.data.Rd
man/analyze.mult.add.data.batch.Rd
man/analyze.stick.data.batch.Rd
man/burns.data.Rd
man/calc.stick.logLn.Rd
man/calculate.posteriors.for.datasets.Rd
man/caudle.data.Rd
man/chou.data.Rd
man/estimate.d.MLE.Rd
man/estimate.d.RDB.Rd
man/estimate.d.sequential.Rd
man/fit.add.model.Rd
man/fit.models.Rd
man/fit.mult.model.Rd
man/fit.nnet.multinomial.regression.Rd
man/fit.stick.model.given.d.Rd
man/generate.geno.matrix.Rd
man/generate.geno.weight.matrix.Rd
man/regress.back.fitness.vs.effect.Rd
man/sim.add.data.Rd
man/sim.data.calculate.posteriors.Rd
man/sim.data.for.mod.selection.Rd
man/sim.data.from.priors.for.mod.selection.Rd
man/sim.fit.mult.add.data.batch.Rd
man/sim.fit.stick.data.batch.Rd
man/sim.mult.data.Rd
man/sim.partial.data.from.priors.for.mod.selection.Rd
man/sim.stick.data.Rd
man/summarize.fits.for.posterior.calc.Rd
man/summarize.posteriors.on.simulated.dataset.Rd
vignettes/Stick-vignette.Rmd
vignettes/Stick-vignette.pdf
