Files in juanbot/G2PML
.Rbuildignore
.gitignore
DESCRIPTION
G2PML.Rproj
NAMESPACE
R/.DS_Store
R/anntation.R
R/ensembles.R
R/featselect.R
R/mldata.R
README.md
inst/.DS_Store
inst/g2pml/.DS_Store
inst/g2pml/.Rapp.history
inst/g2pml/BasicUsage.Rmd
inst/g2pml/BasicUsage.html
inst/g2pml/BasicUsage.pdf
inst/g2pml/EvoTolWebQuery13March2019.txt.zip
inst/g2pml/Ghoshpaperdiseasenondisease.csv
inst/g2pml/Parkinson_Disease_and_Complex_Parkinsonism.Apr2018.rds
inst/g2pml/Parkinson_Disease_and_Complex_Parkinsonism.fs.rds
inst/g2pml/RVIS_Unpublished_ExACv2_March2017.zip
inst/g2pml/adjmatrix.3.5.rds
inst/g2pml/adjmatrix.rds
inst/g2pml/annotation.zip
inst/g2pml/codinggenome.txt
inst/g2pml/controlgenes/.DS_Store
inst/g2pml/controlgenes/allghosh/.DS_Store
inst/g2pml/controlgenes/allghosh/Amyotrophic_lateral_sclerosis_motor_neuron_disease_controls.tsv
inst/g2pml/controlgenes/allghosh/Arthrogryposis_controls.tsv
inst/g2pml/controlgenes/allghosh/Brain_channelopathy_controls.tsv
inst/g2pml/controlgenes/allghosh/Cerebellar_hypoplasia_controls.tsv
inst/g2pml/controlgenes/allghosh/Cerebrovascular_disorders_controls.tsv
inst/g2pml/controlgenes/allghosh/Charcot_Marie_Tooth_disease_controls.tsv
inst/g2pml/controlgenes/allghosh/Congenital_muscular_dystrophy_controls.tsv
inst/g2pml/controlgenes/allghosh/Congenital_myaesthenia_controls.tsv
inst/g2pml/controlgenes/allghosh/Congenital_myopathy_controls.tsv
inst/g2pml/controlgenes/allghosh/Distal_myopathies_controls.tsv
inst/g2pml/controlgenes/allghosh/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease_controls.tsv
inst/g2pml/controlgenes/allghosh/Early_onset_dystonia_controls.tsv
inst/g2pml/controlgenes/allghosh/Epilepsy_Plus_controls.tsv
inst/g2pml/controlgenes/allghosh/Epileptic_encephalopathy_controls.tsv
inst/g2pml/controlgenes/allghosh/Hereditary_ataxia_controls.tsv
inst/g2pml/controlgenes/allghosh/Hereditary_spastic_paraplegia_controls.tsv
inst/g2pml/controlgenes/allghosh/Inherited_white_matter_disorders_controls.tsv
inst/g2pml/controlgenes/allghosh/Limb_girdle_muscular_dystrophy_controls.tsv
inst/g2pml/controlgenes/allghosh/Malformations_of_cortical_development_controls.tsv
inst/g2pml/controlgenes/allghosh/Paediatric_motor_neuronopathies_controls.tsv
inst/g2pml/controlgenes/allghosh/Parkinson_Disease_and_Complex_Parkinsonism_controls.tsv
inst/g2pml/controlgenes/allghosh/Rhabdomyolysis_and_metabolic_muscle_disorders_controls.tsv
inst/g2pml/controlgenes/allghosh/Structural_basal_ganglia_disorders_controls.tsv
inst/g2pml/domino_score_all_final_03.04.17.txt.zip
inst/g2pml/exprmatrix.3.5.rds
inst/g2pml/exprmatrix.rds
inst/g2pml/fordist_cleaned_exac_r03_march16_z_pli_rec_null_data.txt.zip
inst/g2pml/gccontent.txt.zip
inst/g2pml/gel/.DS_Store
inst/g2pml/gel/geApril2018/.DS_Store
inst/g2pml/gel/geApril2018/Amyotrophic_lateral_sclerosis_motor_neuron_disease.csv
inst/g2pml/gel/geApril2018/Arthrogryposis.csv
inst/g2pml/gel/geApril2018/Brain_channelopathy.csv
inst/g2pml/gel/geApril2018/Cerebellar_hypoplasia.csv
inst/g2pml/gel/geApril2018/Cerebrovascular_disorders.csv
inst/g2pml/gel/geApril2018/Charcot_Marie_Tooth_disease.csv
inst/g2pml/gel/geApril2018/Classical_tuberous_sclerosis.csv
inst/g2pml/gel/geApril2018/Congenital_muscular_dystrophy.csv
inst/g2pml/gel/geApril2018/Congenital_myaesthenia.csv
inst/g2pml/gel/geApril2018/Congenital_myopathy.csv
inst/g2pml/gel/geApril2018/Distal_myopathies.csv
inst/g2pml/gel/geApril2018/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease.csv
inst/g2pml/gel/geApril2018/Early_onset_dystonia.csv
inst/g2pml/gel/geApril2018/Epileptic_encephalopathy.csv
inst/g2pml/gel/geApril2018/Familial_Focal_Epilepsies.csv
inst/g2pml/gel/geApril2018/Familial_Genetic_Generalised_Epilepsies.csv
inst/g2pml/gel/geApril2018/Fetal_structural_CNS_abnormalities.csv
inst/g2pml/gel/geApril2018/Genetic_Epilepsies_with_Febrile_Seizures_Plus_GEFS.csv
inst/g2pml/gel/geApril2018/Hereditary_ataxia.csv
inst/g2pml/gel/geApril2018/Hereditary_spastic_paraplegia.csv
inst/g2pml/gel/geApril2018/Holoprosencephaly.csv
inst/g2pml/gel/geApril2018/Inherited_white_matter_disorders.csv
inst/g2pml/gel/geApril2018/Intellectual_disability.csv
inst/g2pml/gel/geApril2018/Intracerebral_calcification_disorders.csv
inst/g2pml/gel/geApril2018/Kleine_Levin_syndrome.csv
inst/g2pml/gel/geApril2018/Limb_girdle_muscular_dystrophy.csv
inst/g2pml/gel/geApril2018/Malformations_of_cortical_development.csv
inst/g2pml/gel/geApril2018/Neurotransmitter_disorders.csv
inst/g2pml/gel/geApril2018/Paediatric_motor_neuronopathies.csv
inst/g2pml/gel/geApril2018/Pain_syndromes.csv
inst/g2pml/gel/geApril2018/Parkinson_Disease_and_Complex_Parkinsonism.csv
inst/g2pml/gel/geApril2018/Rhabdomyolysis_and_metabolic_muscle_disorders.csv
inst/g2pml/gel/geApril2018/Skeletal_Muscle_Channelopathies.csv
inst/g2pml/gel/geApril2018/Structural_basal_ganglia_disorders.csv
inst/g2pml/gel/geJune2018/.DS_Store
inst/g2pml/gel/geJune2018/Amyotrophic_lateral_sclerosis_motor_neuron_disease.csv
inst/g2pml/gel/geJune2018/Arthrogryposis.csv
inst/g2pml/gel/geJune2018/Cerebellar_hypoplasia.csv
inst/g2pml/gel/geJune2018/Cerebrovascular_disorders.csv
inst/g2pml/gel/geJune2018/Charcot_Marie_Tooth_disease.csv
inst/g2pml/gel/geJune2018/Congenital_muscular_dystrophy.csv
inst/g2pml/gel/geJune2018/Congenital_myaesthenia.csv
inst/g2pml/gel/geJune2018/Congenital_myopathy.csv
inst/g2pml/gel/geJune2018/Distal_myopathies.csv
inst/g2pml/gel/geJune2018/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease.csv
inst/g2pml/gel/geJune2018/Early_onset_dystonia.csv
inst/g2pml/gel/geJune2018/Epileptic_encephalopathy.csv
inst/g2pml/gel/geJune2018/Hereditary_ataxia.csv
inst/g2pml/gel/geJune2018/Hereditary_spastic_paraplegia.csv
inst/g2pml/gel/geJune2018/Inherited_white_matter_disorders.csv
inst/g2pml/gel/geJune2018/Intracerebral_calcification_disorders.csv
inst/g2pml/gel/geJune2018/Limb_girdle_muscular_dystrophy.csv
inst/g2pml/gel/geJune2018/Malformations_of_cortical_development.csv
inst/g2pml/gel/geJune2018/Parkinson_Disease_and_Complex_Parkinsonism.csv
inst/g2pml/gel/geJune2018/Rhabdomyolysis_and_metabolic_muscle_disorders.csv
inst/g2pml/gel/geJune2018/Structural_basal_ganglia_disorders.csv
inst/g2pml/gel/geMarch2017/.DS_Store
inst/g2pml/gel/geMarch2017/Amyotrophic_lateral_sclerosis_motor_neuron_disease.csv
inst/g2pml/gel/geMarch2017/Arthrogryposis.csv
inst/g2pml/gel/geMarch2017/Brain_channelopathy.csv
inst/g2pml/gel/geMarch2017/Cerebellar_hypoplasia.csv
inst/g2pml/gel/geMarch2017/Cerebrovascular_disorders.csv
inst/g2pml/gel/geMarch2017/Charcot_Marie_Tooth_disease.csv
inst/g2pml/gel/geMarch2017/Congenital_muscular_dystrophy.csv
inst/g2pml/gel/geMarch2017/Congenital_myaesthenia.csv
inst/g2pml/gel/geMarch2017/Congenital_myopathy.csv
inst/g2pml/gel/geMarch2017/Distal_myopathies.csv
inst/g2pml/gel/geMarch2017/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease.csv
inst/g2pml/gel/geMarch2017/Early_onset_dystonia.csv
inst/g2pml/gel/geMarch2017/Epilepsy_Plus.csv
inst/g2pml/gel/geMarch2017/Epileptic_encephalopathy.csv
inst/g2pml/gel/geMarch2017/Hereditary_ataxia.csv
inst/g2pml/gel/geMarch2017/Hereditary_spastic_paraplegia.csv
inst/g2pml/gel/geMarch2017/Inherited_white_matter_disorders.csv
inst/g2pml/gel/geMarch2017/Limb_girdle_muscular_dystrophy.csv
inst/g2pml/gel/geMarch2017/Malformations_of_cortical_development.csv
inst/g2pml/gel/geMarch2017/Paediatric_motor_neuronopathies.csv
inst/g2pml/gel/geMarch2017/Parkinson_Disease_and_Complex_Parkinsonism.csv
inst/g2pml/gel/geMarch2017/Rhabdomyolysis_and_metabolic_muscle_disorders.csv
inst/g2pml/gel/geMarch2017/Structural_basal_ganglia_disorders.csv
inst/g2pml/gel/geMarch2017All/allgenesGEMarch2017.csv
inst/g2pml/gel/geNovember2017/.DS_Store
inst/g2pml/gel/geNovember2017/Amyotrophic_lateral_sclerosis_motor_neuron_disease.csv
inst/g2pml/gel/geNovember2017/Arthrogryposis.csv
inst/g2pml/gel/geNovember2017/Brain_channelopathy.csv
inst/g2pml/gel/geNovember2017/Cerebellar_hypoplasia.csv
inst/g2pml/gel/geNovember2017/Cerebrovascular_disorders.csv
inst/g2pml/gel/geNovember2017/Charcot_Marie_Tooth_disease.csv
inst/g2pml/gel/geNovember2017/Classical_tuberous_sclerosis.csv
inst/g2pml/gel/geNovember2017/Congenital_muscular_dystrophy.csv
inst/g2pml/gel/geNovember2017/Congenital_myaesthenia.csv
inst/g2pml/gel/geNovember2017/Congenital_myopathy.csv
inst/g2pml/gel/geNovember2017/Distal_myopathies.csv
inst/g2pml/gel/geNovember2017/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease.csv
inst/g2pml/gel/geNovember2017/Early_onset_dystonia.csv
inst/g2pml/gel/geNovember2017/Epileptic_encephalopathy.csv
inst/g2pml/gel/geNovember2017/Familial_Focal_Epilepsies.csv
inst/g2pml/gel/geNovember2017/Familial_Genetic_Generalised_Epilepsies.csv
inst/g2pml/gel/geNovember2017/Fetal_structural_CNS_abnormalities.csv
inst/g2pml/gel/geNovember2017/Genetic_Epilepsies_with_Febrile_Seizures_Plus_GEFS.csv
inst/g2pml/gel/geNovember2017/Hereditary_ataxia.csv
inst/g2pml/gel/geNovember2017/Hereditary_spastic_paraplegia.csv
inst/g2pml/gel/geNovember2017/Holoprosencephaly.csv
inst/g2pml/gel/geNovember2017/Inherited_white_matter_disorders.csv
inst/g2pml/gel/geNovember2017/Intellectual_disability.csv
inst/g2pml/gel/geNovember2017/Intracerebral_calcification_disorders.csv
inst/g2pml/gel/geNovember2017/Limb_girdle_muscular_dystrophy.csv
inst/g2pml/gel/geNovember2017/Malformations_of_cortical_development.csv
inst/g2pml/gel/geNovember2017/Paediatric_motor_neuronopathies.csv
inst/g2pml/gel/geNovember2017/Parkinson_Disease_and_Complex_Parkinsonism.csv
inst/g2pml/gel/geNovember2017/Rhabdomyolysis_and_metabolic_muscle_disorders.csv
inst/g2pml/gel/geNovember2017/Skeletal_Muscle_Channelopathies.csv
inst/g2pml/gel/geNovember2017/Structural_basal_ganglia_disorders.csv
inst/g2pml/gel/geOctober2018/.DS_Store
inst/g2pml/gel/geOctober2018/Amyotrophic_lateral_sclerosis_motor_neuron_disease.csv
inst/g2pml/gel/geOctober2018/Arthrogryposis.csv
inst/g2pml/gel/geOctober2018/Brain_channelopathy.csv
inst/g2pml/gel/geOctober2018/Cerebellar_hypoplasia.csv
inst/g2pml/gel/geOctober2018/Cerebrovascular_disorders.csv
inst/g2pml/gel/geOctober2018/Charcot_Marie_Tooth_disease.csv
inst/g2pml/gel/geOctober2018/Congenital_muscular_dystrophy.csv
inst/g2pml/gel/geOctober2018/Congenital_myaesthenia.csv
inst/g2pml/gel/geOctober2018/Congenital_myopathy.csv
inst/g2pml/gel/geOctober2018/Distal_myopathies.csv
inst/g2pml/gel/geOctober2018/Early_onset_dementia_encompassing_fronto_temporal_dementia_and_prion_disease.csv
inst/g2pml/gel/geOctober2018/Early_onset_dystonia.csv
inst/g2pml/gel/geOctober2018/Epileptic_encephalopathy.csv
inst/g2pml/gel/geOctober2018/Genetic_Epilepsy_Syndromes.csv
inst/g2pml/gel/geOctober2018/Hereditary_ataxia.csv
inst/g2pml/gel/geOctober2018/Hereditary_spastic_paraplegia.csv
inst/g2pml/gel/geOctober2018/Inherited_white_matter_disorders.csv
inst/g2pml/gel/geOctober2018/Intellectual_disability.csv
inst/g2pml/gel/geOctober2018/Intracerebral_calcification_disorders.csv
inst/g2pml/gel/geOctober2018/Limb_girdle_muscular_dystrophy.csv
inst/g2pml/gel/geOctober2018/Malformations_of_cortical_development.csv
inst/g2pml/gel/geOctober2018/Pain_syndromes.csv
inst/g2pml/gel/geOctober2018/Parkinson_Disease_and_Complex_Parkinsonism.csv
inst/g2pml/gel/geOctober2018/Rhabdomyolysis_and_metabolic_muscle_disorders.csv
inst/g2pml/gel/geOctober2018/Structural_basal_ganglia_disorders.csv
inst/g2pml/gene_with_protein_product.txt
inst/g2pml/genelength.txt.zip
inst/g2pml/genesScoresNBarahona.txt.zip
inst/g2pml/gnomADrelease_2.1_ht_constraint_constraint.txt.zip
inst/g2pml/gnomADrelease_2.1_ht_constraint_constraint.zip
inst/g2pml/hexeventdbFull.txt.zip
inst/g2pml/mlDBGtexGenesWGHugoString.txt.zip
inst/g2pml/mlDBMarch2019.txt.zip
inst/g2pml/moi.zip
inst/g2pml/rankedmmmatrix.3.5.rds
inst/g2pml/rankedmmmatrix.rds
inst/g2pml/transcriptcount.txt.zip
inst/g2pml/workinggenes.txt
man/.DS_Store
man/amelieStudy.Rd
man/annotateWithAmelie.Rd
man/dealWithNA.Rd
man/ensembleLearn.Rd
man/ensembleLearnKFold.Rd
man/featureSelection.Rd
man/featureSelectionPlot.Rd
man/fromGenes2MLData.Rd
man/generateMLDB.Rd
man/getAllGeneValues.Rd
man/getGelGenes.Rd
man/getGenesFromPanelApp.Rd
man/getPanelFromPanelApp.Rd
man/getPanelsFromPanelApp.Rd
man/getVarsFromFS.Rd
man/getVarsMetaDataFromFS.Rd
man/pcaPlot.Rd
man/prettyPredictorName.Rd
man/seedGenesVsPredictions.Rd
man/tsneStudy.Rd
man/umapPlot.Rd
