VectraPolarisData: VectraPolarisData
In julia-wrobel/VectraPolarisData: Vectra Polaris and Vectra 3 multiplex single-cell imaging data
VectraPolarisData R Documentation
VectraPolarisData
Description
Vectra 3 and Vectra Polaris multiplex imaging datasets,
formatted into objects of class SpatialExperiment.
Datasets may be used for testing of and as examples in packages,
for tutorials and workflow demonstrations, or similar purposes.
Details
The following Vectra multiplex imaging
datasets are currently available
(see the package vignette for links to details and data dictionaries):
HumanLungCancerV3
HumanOvarianCancerVP
Value
a SpatialExperiment class object
with rows corresponding to samples (cells)
and columns to features (markers).
Author(s)
Julia Wrobel
Examples
# retrieve dataset of interest
library(ExperimentHub)
eh <- ExperimentHub() # initialize hub instance
q <- query(eh, "VectraPolarisData") # retrieve 'VectraPolarisData' records
id <- q$ah_id[1] # specify dataset ID to load
spe <- eh[[id]] # load specified dataset
julia-wrobel/VectraPolarisData documentation built on Sept. 2, 2023, 1:40 p.m.
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| VectraPolarisData | R Documentation |
VectraPolarisData
Description
Vectra 3 and Vectra Polaris multiplex imaging datasets, formatted into objects of class SpatialExperiment. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.
Details
The following Vectra multiplex imaging datasets are currently available (see the package vignette for links to details and data dictionaries):
HumanLungCancerV3
HumanOvarianCancerVP
Value
a SpatialExperiment class object
with rows corresponding to samples (cells)
and columns to features (markers).
Author(s)
Julia Wrobel
Examples
# retrieve dataset of interest
library(ExperimentHub)
eh <- ExperimentHub() # initialize hub instance
q <- query(eh, "VectraPolarisData") # retrieve 'VectraPolarisData' records
id <- q$ah_id[1] # specify dataset ID to load
spe <- eh[[id]] # load specified dataset
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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