.DS_Store
.Rbuildignore
.github/.gitignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/cobiclust.R
R/cobiclustering.R
R/init_pam.R
R/selection_criteria.R
R/utility_functions.R
README.Rmd
README.md
_site.yml
about.Rmd
cobiclust-example1.Rmd
cobiclust-example1_cache/html/__packages
cobiclust-example1_cache/html/best_model_eba340ceef1051d37df45e4ffd73e3e4.RData
cobiclust-example1_cache/html/best_model_eba340ceef1051d37df45e4ffd73e3e4.rdb
cobiclust-example1_cache/html/best_model_eba340ceef1051d37df45e4ffd73e3e4.rdx
cobiclust-example1_cache/html/cobiclust_akg_88bfe77c32c3254a904ffd1ddf1f2827.RData
cobiclust-example1_cache/html/cobiclust_akg_88bfe77c32c3254a904ffd1ddf1f2827.rdb
cobiclust-example1_cache/html/cobiclust_akg_88bfe77c32c3254a904ffd1ddf1f2827.rdx
cobiclust-example1_cache/html/graph1_fb2d10be46f85ab73b18e19d050467e5.RData
cobiclust-example1_cache/html/graph1_fb2d10be46f85ab73b18e19d050467e5.rdb
cobiclust-example1_cache/html/graph1_fb2d10be46f85ab73b18e19d050467e5.rdx
cobiclust-example1_cache/html/graph2_cd10ad312c129429ef0d4883b677995e.RData
cobiclust-example1_cache/html/graph2_cd10ad312c129429ef0d4883b677995e.rdb
cobiclust-example1_cache/html/graph2_cd10ad312c129429ef0d4883b677995e.rdx
cobiclust-example1_cache/html/graph3_458624c4349fd48f0aae37ee41ceb591.RData
cobiclust-example1_cache/html/graph3_458624c4349fd48f0aae37ee41ceb591.rdb
cobiclust-example1_cache/html/graph3_458624c4349fd48f0aae37ee41ceb591.rdx
cobiclust-example1_cache/html/graph4_abbe10a8458f3a8e10b5e4b08c112a89.RData
cobiclust-example1_cache/html/graph4_abbe10a8458f3a8e10b5e4b08c112a89.rdb
cobiclust-example1_cache/html/graph4_abbe10a8458f3a8e10b5e4b08c112a89.rdx
cobiclust-example1_cache/html/graph5_672545e264c1483e689417636af90ad7.RData
cobiclust-example1_cache/html/graph5_672545e264c1483e689417636af90ad7.rdb
cobiclust-example1_cache/html/graph5_672545e264c1483e689417636af90ad7.rdx
cobiclust-example1_cache/html/info_e52e091d69079f05c06c2293706c6e04.RData
cobiclust-example1_cache/html/info_e52e091d69079f05c06c2293706c6e04.rdb
cobiclust-example1_cache/html/info_e52e091d69079f05c06c2293706c6e04.rdx
cobiclust-example1_cache/html/unnamed-chunk-2_824990771165c69151f0eadf9f858c1a.RData
cobiclust-example1_cache/html/unnamed-chunk-2_824990771165c69151f0eadf9f858c1a.rdb
cobiclust-example1_cache/html/unnamed-chunk-2_824990771165c69151f0eadf9f858c1a.rdx
cobiclust-example1_cache/html/unnamed-chunk-3_e7cc465c85f25dea1be390412530efd5.RData
cobiclust-example1_cache/html/unnamed-chunk-3_e7cc465c85f25dea1be390412530efd5.rdb
cobiclust-example1_cache/html/unnamed-chunk-3_e7cc465c85f25dea1be390412530efd5.rdx
cobiclust-example1_cache/html/unnamed-chunk-4_e3a59df1dd6275aa4da2154d624c346d.RData
cobiclust-example1_cache/html/unnamed-chunk-4_e3a59df1dd6275aa4da2154d624c346d.rdb
cobiclust-example1_cache/html/unnamed-chunk-4_e3a59df1dd6275aa4da2154d624c346d.rdx
cobiclust-example1_cache/html/unnamed-chunk-5_4666bd8d4630132d7f8d240eb03ebbdf.RData
cobiclust-example1_cache/html/unnamed-chunk-5_4666bd8d4630132d7f8d240eb03ebbdf.rdb
cobiclust-example1_cache/html/unnamed-chunk-5_4666bd8d4630132d7f8d240eb03ebbdf.rdx
cobiclust-example1_cache/html/unnamed-chunk-6_11274369adafdcd22af7faefa0b08e41.RData
cobiclust-example1_cache/html/unnamed-chunk-6_11274369adafdcd22af7faefa0b08e41.rdb
cobiclust-example1_cache/html/unnamed-chunk-6_11274369adafdcd22af7faefa0b08e41.rdx
cobiclust-example1_cache/html/unnamed-chunk-7_d47c55f8e8d0da5916db51c127a3718e.RData
cobiclust-example1_cache/html/unnamed-chunk-7_d47c55f8e8d0da5916db51c127a3718e.rdb
cobiclust-example1_cache/html/unnamed-chunk-7_d47c55f8e8d0da5916db51c127a3718e.rdx
cobiclust-example1_files/figure-html/graph1-1.png
cobiclust-example1_files/figure-html/graph2-1.png
cobiclust-example1_files/figure-html/graph2-2.png
cobiclust-example1_files/figure-html/graph3-1.png
cobiclust-example1_files/figure-html/graph4-1.png
cobiclust.Rproj
dev_history.R
docs/DESCRIPTION
docs/LICENSE.html
docs/NAMESPACE
docs/NEWS.html
docs/R/cobiclust.R
docs/R/cobiclustering.R
docs/R/init_pam.R
docs/R/selection_criteria.R
docs/R/utility_functions.R
docs/about.html
docs/cobiclust-example1.html
docs/cobiclust-example1_files/figure-html/graph1-1.png
docs/cobiclust-example1_files/figure-html/graph2-1.png
docs/cobiclust-example1_files/figure-html/graph2-2.png
docs/cobiclust-example1_files/figure-html/graph3-1.png
docs/cobiclust-example1_files/figure-html/graph4-1.png
docs/index.html
docs/inst/.DS_Store
docs/inst/WORDLIST
docs/man/alpha_calculation.Rd
docs/man/cobiclust.Rd
docs/man/cobiclustering.Rd
docs/man/dicho.Rd
docs/man/foo_a.Rd
docs/man/init_pam.Rd
docs/man/is.cobiclustering.Rd
docs/man/lb_calculation.Rd
docs/man/penalty.Rd
docs/man/qu_calculation.Rd
docs/man/qukg_calculation.Rd
docs/man/selection_criteria.Rd
docs/man/summary.cobiclustering.Rd
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
docs/site_libs/bootstrap-3.3.5/css/cerulean.min.css
docs/site_libs/bootstrap-3.3.5/css/cosmo.min.css
docs/site_libs/bootstrap-3.3.5/css/darkly.min.css
docs/site_libs/bootstrap-3.3.5/css/flatly.min.css
docs/site_libs/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/site_libs/bootstrap-3.3.5/css/journal.min.css
docs/site_libs/bootstrap-3.3.5/css/lumen.min.css
docs/site_libs/bootstrap-3.3.5/css/paper.min.css
docs/site_libs/bootstrap-3.3.5/css/readable.min.css
docs/site_libs/bootstrap-3.3.5/css/sandstone.min.css
docs/site_libs/bootstrap-3.3.5/css/simplex.min.css
docs/site_libs/bootstrap-3.3.5/css/spacelab.min.css
docs/site_libs/bootstrap-3.3.5/css/united.min.css
docs/site_libs/bootstrap-3.3.5/css/yeti.min.css
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/site_libs/bootstrap-3.3.5/js/bootstrap.js
docs/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
docs/site_libs/bootstrap-3.3.5/js/npm.js
docs/site_libs/bootstrap-3.3.5/shim/html5shiv.min.js
docs/site_libs/bootstrap-3.3.5/shim/respond.min.js
docs/site_libs/highlightjs-9.12.0/default.css
docs/site_libs/highlightjs-9.12.0/highlight.js
docs/site_libs/highlightjs-9.12.0/textmate.css
docs/site_libs/jquery-1.11.3/jquery.min.js
docs/site_libs/navigation-1.1/codefolding.js
docs/site_libs/navigation-1.1/sourceembed.js
docs/site_libs/navigation-1.1/tabsets.js
docs/tests/spelling.R
docs/tests/testthat.R
docs/tests/testthat/test-cobiclust.R
index.Rmd
inst/.DS_Store
inst/WORDLIST
man/alpha_calculation.Rd
man/cobiclust.Rd
man/cobiclustering.Rd
man/dicho.Rd
man/foo_a.Rd
man/init_pam.Rd
man/is.cobiclustering.Rd
man/lb_calculation.Rd
man/penalty.Rd
man/qu_calculation.Rd
man/qukg_calculation.Rd
man/selection_criteria.Rd
man/summary.cobiclustering.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-cobiclust.R