API for junyangq/multiSnpnet
Fit a sparse reduced rank regression model on large-scale SNP data and multivariate responses
| Global functions | |
|---|---|
| MSE_coef | Source code |
| MSE_col | Source code |
| SRRR_iterative_missing_covariates | Source code |
| alternate_Y_glmnet | Source code |
| check_configs_diff | Source code |
| check_early_stopping_condition | Man page Source code |
| check_if_metric_exists | Man page Source code |
| coef_multisnpnet | Man page Source code |
| compute_lambda_min_ratio | Source code |
| drop_bulky_stuff_in_fit_object | Man page Source code |
| extract_all_metrics | Man page Source code |
| extract_metrics | Man page Source code |
| extract_weight | Man page Source code |
| extract_weighted_metrics | Man page Source code |
| find_best_lambda_index | Man page Source code |
| find_prev_iter | Man page Source code |
| get_cb_colors | Man page Source code |
| get_non_NA_lines | Man page Source code |
| get_non_zero_coefficients | Man page Source code |
| get_non_zero_coefficients_as_data_frame | Man page Source code |
| get_non_zero_lines | Man page Source code |
| get_rdata_path | Man page Source code |
| get_summary_metrics | Man page Source code |
| initial_Y_imputation | Source code |
| load_multiSnpnetRdata | Man page Source code |
| load_multiSnpnetResultsFromRDataFiles | Man page Source code |
| multisnpnet | Man page Source code |
| plot_biplot | Man page Source code |
| plot_multisnpnet | Man page Source code |
| plot_scree | Man page Source code |
| predict_multisnpnet | Man page Source code |
| prepare_multiSnpnetResults | Man page Source code |
| read_lambda_sequence_from_multiSnpnetResults | Man page Source code |
| read_pvar | Man page Source code |
| row_norm2 | Source code |
| safe_product | Source code |
| score_contribution | Man page Source code |
| score_squared_cosine | Man page Source code |
| separate_ID_ALT_into_two_columns | Man page Source code |
| setupMultiConfigs | Source code |
| timeDiff | Source code |
| time_diff | Source code |
| tsvd_of_C_variant_loadings_as_data_framte | Man page Source code |
| tsvd_of_C_with_names | Man page Source code |
| weighted_rowMeans | Man page Source code |
| which_row_active | Source code |
| y_de_standardization | Source code |
| y_standardization | Source code |
