Files in junyangq/multiSnpnet
Fit a sparse reduced rank regression model on large-scale SNP data and multivariate responses
.gitignore
DESCRIPTION
NAMESPACE
R/functions.R
R/multisnpnet.R
README.md
inst/extdata/sample.pgen
inst/extdata/sample.phe
inst/extdata/sample.psam
inst/extdata/sample.pvar.zst
man/check_early_stopping_condition.Rd
man/check_if_metric_exists.Rd
man/coef_multisnpnet.Rd
man/drop_bulky_stuff_in_fit_object.Rd
man/extract_all_metrics.Rd
man/extract_metrics.Rd
man/extract_weight.Rd
man/extract_weighted_metrics.Rd
man/find_best_lambda_index.Rd
man/find_prev_iter.Rd
man/get_cb_colors.Rd
man/get_non_NA_lines.Rd
man/get_non_zero_coefficients.Rd
man/get_non_zero_coefficients_as_data_frame.Rd
man/get_non_zero_lines.Rd
man/get_rdata_path.Rd
man/get_summary_metrics.Rd
man/load_multiSnpnetRdata.Rd
man/load_multiSnpnetResultsFromRDataFiles.Rd
man/multisnpnet.Rd
man/plot_biplot.Rd
man/plot_multisnpnet.Rd
man/plot_scree.Rd
man/predict_multisnpnet.Rd
man/prepare_multiSnpnetResults.Rd
man/read_lambda_sequence_from_multiSnpnetResults.Rd
man/read_pvar.Rd
man/score_contribution.Rd
man/score_squared_cosine.Rd
man/separate_ID_ALT_into_two_columns.Rd
man/tsvd_of_C_variant_loadings_as_data_framte.Rd
man/tsvd_of_C_with_names.Rd
man/weighted_rowMeans.Rd
vignettes/vignette.Rmd
vignettes/vignette.pdf
