build_fasta: build a fasta file
In jurenoult/fishphylo: Analyses of DNA Sequences
Description
Usage
Arguments
Value
Examples
Description
Download sequences from Genbank and build a fasta file from an object output by cb_taxa_gene function
Usage
1
build_fasta(term, retmax = 500, rettype = "fasta")
Arguments
term
output of cb_taxa_gene function, gives a list of taxon and the name of the gene
retmax
max number of sequences to retain; default is 500
rettype
format of the output; default is Fasta
Value
return a list of fasta sequences
Examples
1
2
pom <- cb_taxa_gene("Pomatoschistus adriaticus","COI")
seq_fasta <- build_fasta(pom)
jurenoult/fishphylo documentation built on Jan. 1, 2021, 7:12 a.m.
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Description Usage Arguments Value Examples
Description
Download sequences from Genbank and build a fasta file from an object output by cb_taxa_gene function
Usage
1 | build_fasta(term, retmax = 500, rettype = "fasta")
|
Arguments
term |
output of cb_taxa_gene function, gives a list of taxon and the name of the gene |
retmax |
max number of sequences to retain; default is 500 |
rettype |
format of the output; default is Fasta |
Value
return a list of fasta sequences
Examples
1 2 | pom <- cb_taxa_gene("Pomatoschistus adriaticus","COI")
seq_fasta <- build_fasta(pom)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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