MisclassificationEstimate: RNA-Seq classifier evaluation to assesse the performance of...
In jvanheld/RNAseqMVA:

this script to evaluate and assesse the performance of the RNA-Seq calssifier by # Random sampling (random partitioning) estimation of the misclassification rate.

1 2	MisclassificationEstimate(countTable, classes, trainingProportion = 2/3, classifier = "knn", verbose = FALSE, k = 3)

`countTable`	this data frame for RNA-Seq data which contains one row for indiviual and one column for variable
`classes`	such is vector for our case for classes,
`k`	is number of neighbours passed to classifier
`trainingproportion`	is the ratio of the training suset from the whole data set
`calssfier`	is specie of the classifier